Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

perf: autobump bio/bwa/mem-samblaster #2961

Merged
merged 2 commits into from
May 31, 2024
Merged

perf: autobump bio/bwa/mem-samblaster #2961

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
8706a63
perf: update bio/bwa/mem-samblaster/environment.yaml.
snakedeploy-bot[bot] May 31, 2024
1527a60
perf: update env pinning.
snakedeploy-bot[bot] May 31, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
16 changes: 8 additions & 8 deletions bio/bwa/mem-samblaster/environment.linux-64.pin.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,21 +3,21 @@
# platform: linux-64
@EXPLICIT
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_5.conda#f6f6600d18a4047b54f803cf708b868a
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_5.conda#d211c42b9ce49aee3734fdc828731689
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-hc0a3c3a_7.conda#53ebd4c833fa01cb2c6353e99f905406
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h77fa898_7.conda#abf3fec87c2563697defa759dec3d639
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_5.conda#d4ff227c46917d3b4565302a2bbb276b
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h77fa898_7.conda#72ec1b1b04c4d15d4204ece1ecea5978
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4
https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h4ab18f5_6.conda#27329162c0dc732bcf67a4e0cd488125
https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4.20240210-h59595ed_0.conda#97da8860a0da5413c7c98a3b3838a645
https://conda.anaconda.org/bioconda/linux-64/samblaster-0.1.26-h4ac6f70_4.tar.bz2#ec247b30a124fca1bd48a709c15739ec
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h59595ed_0.conda#fcea371545eda051b6deafb24889fc69
https://conda.anaconda.org/bioconda/linux-64/samblaster-0.1.26-h4ac6f70_5.tar.bz2#a75893fa748b34123082ea21d4df229a
https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-7_hd590300_perl5.conda#f2cfec9406850991f4e3d960cc9e3321
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-hd590300_5.conda#68c34ec6149623be41a1933ab996a209
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-h4ab18f5_6.conda#559d338a4234c2ad6e676f460a093e67
https://conda.anaconda.org/bioconda/linux-64/bwa-0.7.18-he4a0461_0.tar.bz2#848d5a392a3a38545c42b1a079ca27c0
https://conda.anaconda.org/conda-forge/linux-64/libllvm12-12.0.1-hf817b99_2.tar.bz2#dd23dea4ce9818bc420fe53a47e8764e
https://conda.anaconda.org/conda-forge/linux-64/ldc-1.28.1-hcf88599_0.tar.bz2#2a72ea7786be25e98de98eb572a6ff4d
https://conda.anaconda.org/bioconda/linux-64/sambamba-1.0-h98b6b92_0.tar.bz2#ac3123bb79fd0d4e66d1d658555b6516
https://conda.anaconda.org/bioconda/linux-64/sambamba-1.0.1-h6f6fda4_0.tar.bz2#feeba874a4da94e5b53912b8d940d845
2 changes: 1 addition & 1 deletion bio/bwa/mem-samblaster/environment.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,5 +4,5 @@ channels:
- nodefaults
dependencies:
- bwa =0.7.18
- sambamba =1.0
- sambamba =1.0.1
- samblaster =0.1.26
Loading