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perf: autobump bio/gatk/variantstotable #1539

Merged
merged 1 commit into from
Jul 14, 2023
Merged

perf: autobump bio/gatk/variantstotable #1539

merged 1 commit into from
Jul 14, 2023

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Automatic update of bio/gatk/variantstotable.

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Automatically approving successfull autobump

@mergify mergify bot merged commit 00d5abd into master Jul 14, 2023
@mergify mergify bot deleted the autobump/bio-gatk-variantstotable branch July 14, 2023 02:06
johanneskoester pushed a commit that referenced this pull request Aug 4, 2023
@github-actions
chore: release 2.3.0 (#1548)
5d5a505 
🤖 I have created a release \*beep\* \*boop\*
---
##
[2.3.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v2.2.1...v2.3.0)
(2023-08-04)


### Features

* Bowtie2 meta
([#1586](https://www.github.com/snakemake/snakemake-wrappers/issues/1586))
([d8edd7b](https://www.github.com/snakemake/snakemake-wrappers/commit/d8edd7bb2d282f097685d593abe1d2f83b3f1120))
* enable output of unmapped reads
([#1549](https://www.github.com/snakemake/snakemake-wrappers/issues/1549))
([bff21bc](https://www.github.com/snakemake/snakemake-wrappers/commit/bff21bc8f644806a4f49ab68e1d8b70464460e02))
* Gatk calculate contamination
([#1547](https://www.github.com/snakemake/snakemake-wrappers/issues/1547))
([4f73135](https://www.github.com/snakemake/snakemake-wrappers/commit/4f73135020da21e5e472acc42f7b229998788010))


### Bug Fixes

* freebayes wrapper
([#1715](https://www.github.com/snakemake/snakemake-wrappers/issues/1715))
([8656035](https://www.github.com/snakemake/snakemake-wrappers/commit/865603539bba2e516acf50a7c38186810f1da051))


### Performance Improvements

* autobump bio/bazam
([#1555](https://www.github.com/snakemake/snakemake-wrappers/issues/1555))
([9c5d121](https://www.github.com/snakemake/snakemake-wrappers/commit/9c5d121c561e00b3963e87d6f84020043fdaea2c))
* autobump bio/bcftools/call
([#1691](https://www.github.com/snakemake/snakemake-wrappers/issues/1691))
([c6b88eb](https://www.github.com/snakemake/snakemake-wrappers/commit/c6b88ebc62f3153f636431acca6526a2ffe972da))
* autobump bio/bcftools/call
([#1710](https://www.github.com/snakemake/snakemake-wrappers/issues/1710))
([7430a6f](https://www.github.com/snakemake/snakemake-wrappers/commit/7430a6f765e06d7684a265d89f44145bad1e7157))
* autobump bio/bcftools/concat
([#1531](https://www.github.com/snakemake/snakemake-wrappers/issues/1531))
([d6edd85](https://www.github.com/snakemake/snakemake-wrappers/commit/d6edd85e222310bbdd28369f92186c7e33695d63))
* autobump bio/bcftools/concat
([#1603](https://www.github.com/snakemake/snakemake-wrappers/issues/1603))
([5b72872](https://www.github.com/snakemake/snakemake-wrappers/commit/5b72872754d8eb177f064db70dc634bd640e6944))
* autobump bio/bcftools/concat
([#1630](https://www.github.com/snakemake/snakemake-wrappers/issues/1630))
([cd70d77](https://www.github.com/snakemake/snakemake-wrappers/commit/cd70d7729504dcf7afea4557191e335f3efeeceb))
* autobump bio/bcftools/concat
([#1661](https://www.github.com/snakemake/snakemake-wrappers/issues/1661))
([4455dcc](https://www.github.com/snakemake/snakemake-wrappers/commit/4455dcc8af9195e4b44ffdeb053c12b93a3ea858))
* autobump bio/bcftools/concat
([#1692](https://www.github.com/snakemake/snakemake-wrappers/issues/1692))
([a7ece62](https://www.github.com/snakemake/snakemake-wrappers/commit/a7ece6239b043bf8583ac568427442d3021b68b4))
* autobump bio/bcftools/filter
([#1609](https://www.github.com/snakemake/snakemake-wrappers/issues/1609))
([30d5d64](https://www.github.com/snakemake/snakemake-wrappers/commit/30d5d64904b956e2769b6e804e0972cfc0b4a60b))
* autobump bio/bcftools/filter
([#1637](https://www.github.com/snakemake/snakemake-wrappers/issues/1637))
([772a77b](https://www.github.com/snakemake/snakemake-wrappers/commit/772a77baa7073666d2ddc09a377768acb3ca8d59))
* autobump bio/bcftools/filter
([#1676](https://www.github.com/snakemake/snakemake-wrappers/issues/1676))
([1e69c25](https://www.github.com/snakemake/snakemake-wrappers/commit/1e69c25c5e7f27083bdd3c31569c3c5e57739071))
* autobump bio/bcftools/filter
([#1703](https://www.github.com/snakemake/snakemake-wrappers/issues/1703))
([c5224a5](https://www.github.com/snakemake/snakemake-wrappers/commit/c5224a5b7adc3245dd48783550a9da505a2cf577))
* autobump bio/bcftools/index
([#1537](https://www.github.com/snakemake/snakemake-wrappers/issues/1537))
([d403067](https://www.github.com/snakemake/snakemake-wrappers/commit/d4030670e039333b146989bff0437155e6e00944))
* autobump bio/bcftools/index
([#1602](https://www.github.com/snakemake/snakemake-wrappers/issues/1602))
([45e0d82](https://www.github.com/snakemake/snakemake-wrappers/commit/45e0d827bdc05bcb2b508fa1be3252b747badfb1))
* autobump bio/bcftools/merge
([#1558](https://www.github.com/snakemake/snakemake-wrappers/issues/1558))
([18ec70f](https://www.github.com/snakemake/snakemake-wrappers/commit/18ec70f9a8c7d47cdfd0b85aa52ba03879ffa5b9))
* autobump bio/bcftools/mpileup
([#1620](https://www.github.com/snakemake/snakemake-wrappers/issues/1620))
([6bc5006](https://www.github.com/snakemake/snakemake-wrappers/commit/6bc50063bcb60d6cf0d84221c72d4cc5fae174f0))
* autobump bio/bcftools/mpileup
([#1683](https://www.github.com/snakemake/snakemake-wrappers/issues/1683))
([dc033c5](https://www.github.com/snakemake/snakemake-wrappers/commit/dc033c50f08819c8a63090f5663fa1c829dced79))
* autobump bio/bcftools/norm
([#1680](https://www.github.com/snakemake/snakemake-wrappers/issues/1680))
([0f32280](https://www.github.com/snakemake/snakemake-wrappers/commit/0f32280c4f6725564dee2bb784badca4bae39823))
* autobump bio/bcftools/norm
([#1706](https://www.github.com/snakemake/snakemake-wrappers/issues/1706))
([6822f7a](https://www.github.com/snakemake/snakemake-wrappers/commit/6822f7a8e28edda64b3771c1f4d46687f64b8691))
* autobump bio/bcftools/reheader
([#1595](https://www.github.com/snakemake/snakemake-wrappers/issues/1595))
([83455a3](https://www.github.com/snakemake/snakemake-wrappers/commit/83455a397f24bedbe811939cf012f1088fa758cd))
* autobump bio/bcftools/reheader
([#1638](https://www.github.com/snakemake/snakemake-wrappers/issues/1638))
([6c63212](https://www.github.com/snakemake/snakemake-wrappers/commit/6c63212e503cbdfa43250616ee0359116709f017))
* autobump bio/bcftools/sort
([#1575](https://www.github.com/snakemake/snakemake-wrappers/issues/1575))
([92b11ed](https://www.github.com/snakemake/snakemake-wrappers/commit/92b11ed004513e7118c0d2e0bd0f58cc65b251f7))
* autobump bio/bcftools/view
([#1618](https://www.github.com/snakemake/snakemake-wrappers/issues/1618))
([e7c3390](https://www.github.com/snakemake/snakemake-wrappers/commit/e7c3390069dfcdf4da61199aa9d2d26569d94720))
* autobump bio/bcftools/view
([#1631](https://www.github.com/snakemake/snakemake-wrappers/issues/1631))
([0756847](https://www.github.com/snakemake/snakemake-wrappers/commit/0756847ed1e837192d5310fbbca89305d4617295))
* autobump bio/bellerophon
([#1614](https://www.github.com/snakemake/snakemake-wrappers/issues/1614))
([d9c9b0b](https://www.github.com/snakemake/snakemake-wrappers/commit/d9c9b0bda61505b66413b10590787d72ec39eab4))
* autobump bio/bellerophon
([#1646](https://www.github.com/snakemake/snakemake-wrappers/issues/1646))
([5c47391](https://www.github.com/snakemake/snakemake-wrappers/commit/5c473918eb84a7b3bc6d4fbbb7d4587b12b0c38f))
* autobump bio/bgzip
([#1652](https://www.github.com/snakemake/snakemake-wrappers/issues/1652))
([3cc38ac](https://www.github.com/snakemake/snakemake-wrappers/commit/3cc38acaa6374a4425d8cac3fc5b72c6c3126747))
* autobump bio/bismark/bismark2report
([#1714](https://www.github.com/snakemake/snakemake-wrappers/issues/1714))
([6d95e56](https://www.github.com/snakemake/snakemake-wrappers/commit/6d95e56da2e2ed09133cb20ea2608f94d1483228))
* autobump bio/bismark/bismark2summary
([#1594](https://www.github.com/snakemake/snakemake-wrappers/issues/1594))
([c7a0448](https://www.github.com/snakemake/snakemake-wrappers/commit/c7a044874f51c6231c8551b1e5b36d7302732385))
* autobump bio/bismark/bismark2summary
([#1679](https://www.github.com/snakemake/snakemake-wrappers/issues/1679))
([135dabc](https://www.github.com/snakemake/snakemake-wrappers/commit/135dabc0f7b5f349cf43468be5899054e8f1d478))
* autobump bio/bismark/bismark2summary
([#1687](https://www.github.com/snakemake/snakemake-wrappers/issues/1687))
([3cf315a](https://www.github.com/snakemake/snakemake-wrappers/commit/3cf315a96c213e92ef8ba6712b259d60840913d0))
* autobump bio/bowtie2/align
([#1634](https://www.github.com/snakemake/snakemake-wrappers/issues/1634))
([477d1ab](https://www.github.com/snakemake/snakemake-wrappers/commit/477d1ab674e32642b0d46885964889230371193e))
* autobump bio/bustools/sort
([#1688](https://www.github.com/snakemake/snakemake-wrappers/issues/1688))
([7d37969](https://www.github.com/snakemake/snakemake-wrappers/commit/7d3796958009213f62637e073b801974d82aab52))
* autobump bio/bustools/text
([#1523](https://www.github.com/snakemake/snakemake-wrappers/issues/1523))
([08f0e0a](https://www.github.com/snakemake/snakemake-wrappers/commit/08f0e0a0b4033fff6aa1d30b0e0d315ae5f3086a))
* autobump bio/bwa-mem2/mem
([#1669](https://www.github.com/snakemake/snakemake-wrappers/issues/1669))
([92ba532](https://www.github.com/snakemake/snakemake-wrappers/commit/92ba53269f589f156b8827d6188956fdad70c678))
* autobump bio/bwa/mem
([#1656](https://www.github.com/snakemake/snakemake-wrappers/issues/1656))
([03224f2](https://www.github.com/snakemake/snakemake-wrappers/commit/03224f2c01a67f0df2efef4162b6f0b9c8b7aa41))
* autobump bio/dada2/add-species
([#1522](https://www.github.com/snakemake/snakemake-wrappers/issues/1522))
([2f2ccc6](https://www.github.com/snakemake/snakemake-wrappers/commit/2f2ccc6b67dd1edd17eca576791f8be38bbaa675))
* autobump bio/dada2/assign-species
([#1563](https://www.github.com/snakemake/snakemake-wrappers/issues/1563))
([adf781e](https://www.github.com/snakemake/snakemake-wrappers/commit/adf781e04c33988518b194aa322ac861ee0ebe06))
* autobump bio/dada2/assign-taxonomy
([#1551](https://www.github.com/snakemake/snakemake-wrappers/issues/1551))
([31c3b9a](https://www.github.com/snakemake/snakemake-wrappers/commit/31c3b9a9e146de3a4337108f15702e8c175f457b))
* autobump bio/dada2/collapse-nomismatch
([#1554](https://www.github.com/snakemake/snakemake-wrappers/issues/1554))
([db5b2ea](https://www.github.com/snakemake/snakemake-wrappers/commit/db5b2ea65ea7e811b54eb7e574a72d8cd257aa61))
* autobump bio/dada2/dereplicate-fastq
([#1671](https://www.github.com/snakemake/snakemake-wrappers/issues/1671))
([2386b66](https://www.github.com/snakemake/snakemake-wrappers/commit/2386b66863189046d1df76bb5d16d9c8f9263110))
* autobump bio/dada2/filter-trim
([#1641](https://www.github.com/snakemake/snakemake-wrappers/issues/1641))
([c58bcfb](https://www.github.com/snakemake/snakemake-wrappers/commit/c58bcfb860af2598f83d06d81156ea52eb15988c))
* autobump bio/dada2/learn-errors
([#1574](https://www.github.com/snakemake/snakemake-wrappers/issues/1574))
([da832b1](https://www.github.com/snakemake/snakemake-wrappers/commit/da832b10177fd96b57b7475ee16c1fa39d86f5ba))
* autobump bio/dada2/make-table
([#1678](https://www.github.com/snakemake/snakemake-wrappers/issues/1678))
([a235b2f](https://www.github.com/snakemake/snakemake-wrappers/commit/a235b2f33a35de1ce4e807a0cdb5d14d4afc1330))
* autobump bio/dada2/merge-pairs
([#1588](https://www.github.com/snakemake/snakemake-wrappers/issues/1588))
([17d69a0](https://www.github.com/snakemake/snakemake-wrappers/commit/17d69a05c188d5072542db1876255f63dbb7368b))
* autobump bio/dada2/merge-pairs
([#1689](https://www.github.com/snakemake/snakemake-wrappers/issues/1689))
([ef65a5f](https://www.github.com/snakemake/snakemake-wrappers/commit/ef65a5f39e403c2e2d8e1d61206d9854fcfa60c4))
* autobump bio/dada2/merge-pairs
([#1712](https://www.github.com/snakemake/snakemake-wrappers/issues/1712))
([bc6d079](https://www.github.com/snakemake/snakemake-wrappers/commit/bc6d0798881a572d73876475ec989d7ddb4b532d))
* autobump bio/dada2/quality-profile
([#1534](https://www.github.com/snakemake/snakemake-wrappers/issues/1534))
([05d12b3](https://www.github.com/snakemake/snakemake-wrappers/commit/05d12b309df632f6d45683b63843cd300333fde5))
* autobump bio/dada2/remove-chimeras
([#1541](https://www.github.com/snakemake/snakemake-wrappers/issues/1541))
([7282994](https://www.github.com/snakemake/snakemake-wrappers/commit/7282994399a03f3f693b7efcc0935f2c2a71739c))
* autobump bio/dada2/sample-inference
([#1702](https://www.github.com/snakemake/snakemake-wrappers/issues/1702))
([a82d8fc](https://www.github.com/snakemake/snakemake-wrappers/commit/a82d8fc9da618ae57572a2e8d5899c1ea767dde6))
* autobump bio/deeptools/alignmentsieve
([#1635](https://www.github.com/snakemake/snakemake-wrappers/issues/1635))
([b01bb82](https://www.github.com/snakemake/snakemake-wrappers/commit/b01bb82378638f404a77959c9e2725c81480f0ec))
* autobump bio/deeptools/plotheatmap
([#1561](https://www.github.com/snakemake/snakemake-wrappers/issues/1561))
([faf49e2](https://www.github.com/snakemake/snakemake-wrappers/commit/faf49e20a7e19592bde11835206b2427b9104c87))
* autobump bio/deseq2/deseqdataset
([#1633](https://www.github.com/snakemake/snakemake-wrappers/issues/1633))
([176be53](https://www.github.com/snakemake/snakemake-wrappers/commit/176be53f11bde39e27bea97977eeedf72fdbd2fb))
* autobump bio/diamond/blastp
([#1570](https://www.github.com/snakemake/snakemake-wrappers/issues/1570))
([3f61c8f](https://www.github.com/snakemake/snakemake-wrappers/commit/3f61c8fdb7c309ecc6655ff138467055313808e2))
* autobump bio/diamond/blastx
([#1670](https://www.github.com/snakemake/snakemake-wrappers/issues/1670))
([0eaf267](https://www.github.com/snakemake/snakemake-wrappers/commit/0eaf267181dce43233e7708101593ee3805917c2))
* autobump bio/diamond/makedb
([#1711](https://www.github.com/snakemake/snakemake-wrappers/issues/1711))
([e4bc2e4](https://www.github.com/snakemake/snakemake-wrappers/commit/e4bc2e4a2482a579e72821152d7964f8a57df99c))
* autobump bio/fastqc
([#1540](https://www.github.com/snakemake/snakemake-wrappers/issues/1540))
([1e0d23e](https://www.github.com/snakemake/snakemake-wrappers/commit/1e0d23e8264738a256bc7059c73533befdc56e3f))
* autobump bio/fgbio/annotatebamwithumis
([#1572](https://www.github.com/snakemake/snakemake-wrappers/issues/1572))
([47e4c62](https://www.github.com/snakemake/snakemake-wrappers/commit/47e4c6284b11f6aab4aae962a2d32df9a6c13b26))
* autobump bio/fgbio/collectduplexseqmetrics
([#1648](https://www.github.com/snakemake/snakemake-wrappers/issues/1648))
([e8fd7f0](https://www.github.com/snakemake/snakemake-wrappers/commit/e8fd7f0cf0f21384738998af7ea3114ac3f5374f))
* autobump bio/gatk/applybqsr
([#1589](https://www.github.com/snakemake/snakemake-wrappers/issues/1589))
([5ebf186](https://www.github.com/snakemake/snakemake-wrappers/commit/5ebf1868c5e30ed4b327e37bbff5cc4766abd49b))
* autobump bio/gatk/applybqsrspark
([#1578](https://www.github.com/snakemake/snakemake-wrappers/issues/1578))
([007a4d1](https://www.github.com/snakemake/snakemake-wrappers/commit/007a4d11c21f5f3bb391b9d4288e549b3a7185ac))
* autobump bio/gatk/applyvqsr
([#1544](https://www.github.com/snakemake/snakemake-wrappers/issues/1544))
([0c45d39](https://www.github.com/snakemake/snakemake-wrappers/commit/0c45d3911700546cd743c099a521cd011d0c28a2))
* autobump bio/gatk/baserecalibrator
([#1535](https://www.github.com/snakemake/snakemake-wrappers/issues/1535))
([0d006e0](https://www.github.com/snakemake/snakemake-wrappers/commit/0d006e09645897807a24cd6af5963fc5155dc03a))
* autobump bio/gatk/baserecalibrator
([#1581](https://www.github.com/snakemake/snakemake-wrappers/issues/1581))
([153b20b](https://www.github.com/snakemake/snakemake-wrappers/commit/153b20bcfdad658be7959f1b95b6bfb0aa03e3a9))
* autobump bio/gatk/baserecalibratorspark
([#1600](https://www.github.com/snakemake/snakemake-wrappers/issues/1600))
([2d5a263](https://www.github.com/snakemake/snakemake-wrappers/commit/2d5a263bfec71b8d8ca07e7a558453c6f0ef11a3))
* autobump bio/gatk/baserecalibratorspark
([#1649](https://www.github.com/snakemake/snakemake-wrappers/issues/1649))
([207026c](https://www.github.com/snakemake/snakemake-wrappers/commit/207026c9caa39af09e62f300811bf311a886e9a7))
* autobump bio/gatk/callcopyratiosegments
([#1527](https://www.github.com/snakemake/snakemake-wrappers/issues/1527))
([5a4741a](https://www.github.com/snakemake/snakemake-wrappers/commit/5a4741acd39642095459cdbaec7b749fb8354ae8))
* autobump bio/gatk/callcopyratiosegments
([#1557](https://www.github.com/snakemake/snakemake-wrappers/issues/1557))
([4c788df](https://www.github.com/snakemake/snakemake-wrappers/commit/4c788df8f68823bdff87d00a81df6b8541e49213))
* autobump bio/gatk/cleansam
([#1599](https://www.github.com/snakemake/snakemake-wrappers/issues/1599))
([a58bbfe](https://www.github.com/snakemake/snakemake-wrappers/commit/a58bbfe6d15e005bad9cde29da3d780c1c90a601))
* autobump bio/gatk/cleansam
([#1659](https://www.github.com/snakemake/snakemake-wrappers/issues/1659))
([299198f](https://www.github.com/snakemake/snakemake-wrappers/commit/299198fab4635546351653d0fbe5e5e39873f1c2))
* autobump bio/gatk/collectalleliccounts
([#1719](https://www.github.com/snakemake/snakemake-wrappers/issues/1719))
([bf74f2f](https://www.github.com/snakemake/snakemake-wrappers/commit/bf74f2f922a2164c3cf6315c2fc2a9d4d505c3d9))
* autobump bio/gatk/collectreadcounts
([#1684](https://www.github.com/snakemake/snakemake-wrappers/issues/1684))
([dae6459](https://www.github.com/snakemake/snakemake-wrappers/commit/dae64590862e492df1ba7e53cce41e9557688ee5))
* autobump bio/gatk/denoisereadcounts
([#1704](https://www.github.com/snakemake/snakemake-wrappers/issues/1704))
([c398633](https://www.github.com/snakemake/snakemake-wrappers/commit/c39863369932331f70c5cc0175a0a903b41c6181))
* autobump bio/gatk/depthofcoverage
([#1601](https://www.github.com/snakemake/snakemake-wrappers/issues/1601))
([45248d4](https://www.github.com/snakemake/snakemake-wrappers/commit/45248d45a0684f08a0697129b146f601822283b6))
* autobump bio/gatk/depthofcoverage
([#1667](https://www.github.com/snakemake/snakemake-wrappers/issues/1667))
([7ffe876](https://www.github.com/snakemake/snakemake-wrappers/commit/7ffe876823b1b02e9c96821f60671d6b3a506d0c))
* autobump bio/gatk/filtermutectcalls
([#1668](https://www.github.com/snakemake/snakemake-wrappers/issues/1668))
([8924792](https://www.github.com/snakemake/snakemake-wrappers/commit/89247926b6cd852161abe9765f3e66bb96c73a6d))
* autobump bio/gatk/filtermutectcalls
([#1713](https://www.github.com/snakemake/snakemake-wrappers/issues/1713))
([30c7e9b](https://www.github.com/snakemake/snakemake-wrappers/commit/30c7e9bbcf3cea2188bca967c4a358f69cbfe8bf))
* autobump bio/gatk/genomicsdbimport
([#1722](https://www.github.com/snakemake/snakemake-wrappers/issues/1722))
([eef7b43](https://www.github.com/snakemake/snakemake-wrappers/commit/eef7b43efdfbd0a92e7cc3ef423cd774ef0ab171))
* autobump bio/gatk/genotypegvcfs
([#1560](https://www.github.com/snakemake/snakemake-wrappers/issues/1560))
([b64e056](https://www.github.com/snakemake/snakemake-wrappers/commit/b64e056c8eca0d12159bb73d225dc61eae3bef5d))
* autobump bio/gatk/haplotypecaller
([#1705](https://www.github.com/snakemake/snakemake-wrappers/issues/1705))
([ec9815e](https://www.github.com/snakemake/snakemake-wrappers/commit/ec9815eaf4ecc8e0b4b85db2bd0940961b0548b6))
* autobump bio/gatk/intervallisttobed
([#1622](https://www.github.com/snakemake/snakemake-wrappers/issues/1622))
([3d5215d](https://www.github.com/snakemake/snakemake-wrappers/commit/3d5215dd5d0da5a22c93f28374a5d36919ff97a6))
* autobump bio/gatk/intervallisttobed
([#1647](https://www.github.com/snakemake/snakemake-wrappers/issues/1647))
([e4c13a2](https://www.github.com/snakemake/snakemake-wrappers/commit/e4c13a2cd9b9b8ecf9314e1bc6ee5b59875339c0))
* autobump bio/gatk/intervallisttobed
([#1663](https://www.github.com/snakemake/snakemake-wrappers/issues/1663))
([9654834](https://www.github.com/snakemake/snakemake-wrappers/commit/9654834c9c5f9827e9a27687a3ce17034a2ce8b2))
* autobump bio/gatk/intervallisttobed
([#1693](https://www.github.com/snakemake/snakemake-wrappers/issues/1693))
([8acf652](https://www.github.com/snakemake/snakemake-wrappers/commit/8acf6520e7ec204e0a4e663834632d8d1efc6a89))
* autobump bio/gatk/learnreadorientationmodel
([#1625](https://www.github.com/snakemake/snakemake-wrappers/issues/1625))
([bd0fa42](https://www.github.com/snakemake/snakemake-wrappers/commit/bd0fa42705393cb1408a84ce4a060272d5428ce6))
* autobump bio/gatk/learnreadorientationmodel
([#1653](https://www.github.com/snakemake/snakemake-wrappers/issues/1653))
([c2c64ea](https://www.github.com/snakemake/snakemake-wrappers/commit/c2c64ea596f00ccb67b27aa38c94c9a5376e172d))
* autobump bio/gatk/leftalignandtrimvariants
([#1639](https://www.github.com/snakemake/snakemake-wrappers/issues/1639))
([c3f89ea](https://www.github.com/snakemake/snakemake-wrappers/commit/c3f89ea03d5bd6438d4af260c1c1c6f906a95926))
* autobump bio/gatk/leftalignandtrimvariants
([#1697](https://www.github.com/snakemake/snakemake-wrappers/issues/1697))
([c4b738a](https://www.github.com/snakemake/snakemake-wrappers/commit/c4b738a40d21b0f14dd52b9e112ec88233b9f71b))
* autobump bio/gatk/markduplicatesspark
([#1467](https://www.github.com/snakemake/snakemake-wrappers/issues/1467))
([1d383b7](https://www.github.com/snakemake/snakemake-wrappers/commit/1d383b71d42a13ba2df6a9404bb7d10ecbcc4b6b))
* autobump bio/gatk/modelsegments
([#1543](https://www.github.com/snakemake/snakemake-wrappers/issues/1543))
([f26ea4a](https://www.github.com/snakemake/snakemake-wrappers/commit/f26ea4a8d1090467d3b5c2785cde878b2b58ba82))
* autobump bio/gatk/modelsegments
([#1611](https://www.github.com/snakemake/snakemake-wrappers/issues/1611))
([77ff014](https://www.github.com/snakemake/snakemake-wrappers/commit/77ff01495e7dc8df19b11d6acbff6ae1e98ab474))
* autobump bio/gatk/mutect
([#1526](https://www.github.com/snakemake/snakemake-wrappers/issues/1526))
([4789991](https://www.github.com/snakemake/snakemake-wrappers/commit/4789991a17450c2c36681ceeeb53d265fadf6b5f))
* autobump bio/gatk/mutect
([#1696](https://www.github.com/snakemake/snakemake-wrappers/issues/1696))
([666ba69](https://www.github.com/snakemake/snakemake-wrappers/commit/666ba698538fab13afbb9b52a01e1abc8343f76a))
* autobump bio/gatk/printreadsspark
([#1699](https://www.github.com/snakemake/snakemake-wrappers/issues/1699))
([1aee674](https://www.github.com/snakemake/snakemake-wrappers/commit/1aee674a645953d056548fd38dad966606b7d185))
* autobump bio/gatk/scatterintervalsbyns
([#1597](https://www.github.com/snakemake/snakemake-wrappers/issues/1597))
([214c231](https://www.github.com/snakemake/snakemake-wrappers/commit/214c2316448fff942c7824f14cf754212d71c554))
* autobump bio/gatk/scatterintervalsbyns
([#1682](https://www.github.com/snakemake/snakemake-wrappers/issues/1682))
([42e0238](https://www.github.com/snakemake/snakemake-wrappers/commit/42e0238a57d4acf8ec76eba77f8197ddc7e154db))
* autobump bio/gatk/selectvariants
([#1695](https://www.github.com/snakemake/snakemake-wrappers/issues/1695))
([fb5b42d](https://www.github.com/snakemake/snakemake-wrappers/commit/fb5b42d01674337805b741a2e64c340204f09f19))
* autobump bio/gatk/splitintervals
([#1591](https://www.github.com/snakemake/snakemake-wrappers/issues/1591))
([67ccba6](https://www.github.com/snakemake/snakemake-wrappers/commit/67ccba699188b4c02dd0bf2cb1f2557fcf5a544c))
* autobump bio/gatk/splitncigarreads
([#1536](https://www.github.com/snakemake/snakemake-wrappers/issues/1536))
([68b02fe](https://www.github.com/snakemake/snakemake-wrappers/commit/68b02fe81e886721ac457895823491a4eaf21c9d))
* autobump bio/gatk/splitncigarreads
([#1562](https://www.github.com/snakemake/snakemake-wrappers/issues/1562))
([c27f4a6](https://www.github.com/snakemake/snakemake-wrappers/commit/c27f4a6a224de88d1bb6855af5643c84e485385e))
* autobump bio/gatk/variantannotator
([#1582](https://www.github.com/snakemake/snakemake-wrappers/issues/1582))
([2b41efe](https://www.github.com/snakemake/snakemake-wrappers/commit/2b41efeea999b2408cd58afb21eb9fa04cff7e42))
* autobump bio/gatk/varianteval
([#1545](https://www.github.com/snakemake/snakemake-wrappers/issues/1545))
([1b70868](https://www.github.com/snakemake/snakemake-wrappers/commit/1b708687cbf5235cda3ba23c3ccaed1075394f88))
* autobump bio/gatk/varianteval
([#1619](https://www.github.com/snakemake/snakemake-wrappers/issues/1619))
([78c57d1](https://www.github.com/snakemake/snakemake-wrappers/commit/78c57d16fccb06acb46c36707cae8beb43b8e68f))
* autobump bio/gatk/varianteval
([#1677](https://www.github.com/snakemake/snakemake-wrappers/issues/1677))
([29eb05c](https://www.github.com/snakemake/snakemake-wrappers/commit/29eb05c8736207cd37ce620d9b43863e5f4ae3a2))
* autobump bio/gatk/variantfiltration
([#1577](https://www.github.com/snakemake/snakemake-wrappers/issues/1577))
([0dabdf1](https://www.github.com/snakemake/snakemake-wrappers/commit/0dabdf194ead2950b1c2122cf304541f3da83e96))
* autobump bio/gatk/variantstotable
([#1539](https://www.github.com/snakemake/snakemake-wrappers/issues/1539))
([00d5abd](https://www.github.com/snakemake/snakemake-wrappers/commit/00d5abd3d567688fb380da00358ad148f76b4f6b))
* autobump bio/gatk/variantstotable
([#1559](https://www.github.com/snakemake/snakemake-wrappers/issues/1559))
([eba4873](https://www.github.com/snakemake/snakemake-wrappers/commit/eba48737c41efad2b63f77fa9f37c9ee3e308ed9))
* autobump bio/gatk3/baserecalibrator
([#1642](https://www.github.com/snakemake/snakemake-wrappers/issues/1642))
([782593d](https://www.github.com/snakemake/snakemake-wrappers/commit/782593d339d4d51a59d52048e53d7af5929b23c7))
* autobump bio/gatk3/indelrealigner
([#1636](https://www.github.com/snakemake/snakemake-wrappers/issues/1636))
([ab6be44](https://www.github.com/snakemake/snakemake-wrappers/commit/ab6be44365616650342ad7650075fc052bb2a609))
* autobump bio/gatk3/realignertargetcreator
([#1587](https://www.github.com/snakemake/snakemake-wrappers/issues/1587))
([1e320ac](https://www.github.com/snakemake/snakemake-wrappers/commit/1e320acb33840a6e875b908bc4cd93d3910707f4))
* autobump bio/gatk3/realignertargetcreator
([#1650](https://www.github.com/snakemake/snakemake-wrappers/issues/1650))
([66bfa88](https://www.github.com/snakemake/snakemake-wrappers/commit/66bfa88b02b68d6d853d934c6ff596be3d01f149))
* autobump bio/gdc-api/bam-slicing
([#1552](https://www.github.com/snakemake/snakemake-wrappers/issues/1552))
([9760140](https://www.github.com/snakemake/snakemake-wrappers/commit/9760140b9a0c058c44c23ba95b3ef59d15e35473))
* autobump bio/gdc-api/bam-slicing
([#1627](https://www.github.com/snakemake/snakemake-wrappers/issues/1627))
([14ff838](https://www.github.com/snakemake/snakemake-wrappers/commit/14ff8382dfbb04ffcff2e1a287317b45e93789b0))
* autobump bio/genomepy
([#1542](https://www.github.com/snakemake/snakemake-wrappers/issues/1542))
([f615808](https://www.github.com/snakemake/snakemake-wrappers/commit/f6158084badc5b42a1eae0f71b66c45568e01cf3))
* autobump bio/hifiasm
([#1672](https://www.github.com/snakemake/snakemake-wrappers/issues/1672))
([7ad6d77](https://www.github.com/snakemake/snakemake-wrappers/commit/7ad6d7797895488cc792c1ddfbaedabcf68e6b3f))
* autobump bio/hifiasm
([#1694](https://www.github.com/snakemake/snakemake-wrappers/issues/1694))
([a99f0ef](https://www.github.com/snakemake/snakemake-wrappers/commit/a99f0ef10d75e69092973f6e152a4ab4fe2d2630))
* autobump bio/jannovar
([#1640](https://www.github.com/snakemake/snakemake-wrappers/issues/1640))
([cf6d9d4](https://www.github.com/snakemake/snakemake-wrappers/commit/cf6d9d416bd170ee170a878ce3b33eaf64eacfc5))
* autobump bio/kallisto/index
([#1708](https://www.github.com/snakemake/snakemake-wrappers/issues/1708))
([a84c0ab](https://www.github.com/snakemake/snakemake-wrappers/commit/a84c0ab498df5916c7017879394bb183e05ed450))
* autobump bio/kallisto/quant
([#1629](https://www.github.com/snakemake/snakemake-wrappers/issues/1629))
([d076334](https://www.github.com/snakemake/snakemake-wrappers/commit/d076334515e77aa6efb7fa1f415fd7f8b9433a8c))
* autobump bio/last/lastal
([#1666](https://www.github.com/snakemake/snakemake-wrappers/issues/1666))
([1aababe](https://www.github.com/snakemake/snakemake-wrappers/commit/1aababe757430337259293564e202190ad5eedd3))
* autobump bio/last/lastal
([#1709](https://www.github.com/snakemake/snakemake-wrappers/issues/1709))
([fa7a100](https://www.github.com/snakemake/snakemake-wrappers/commit/fa7a10041c5276314a254d671a304f6c8851a0db))
* autobump bio/macs2/callpeak
([#1662](https://www.github.com/snakemake/snakemake-wrappers/issues/1662))
([e175ce2](https://www.github.com/snakemake/snakemake-wrappers/commit/e175ce27e13b190e0bb27b37ab8f51cc06ed41d3))
* autobump bio/mashmap
([#1474](https://www.github.com/snakemake/snakemake-wrappers/issues/1474))
([bf67fcd](https://www.github.com/snakemake/snakemake-wrappers/commit/bf67fcd92ae83269007e656664c7fa8be6b757f0))
* autobump bio/minimap2/aligner
([#1592](https://www.github.com/snakemake/snakemake-wrappers/issues/1592))
([c2c611c](https://www.github.com/snakemake/snakemake-wrappers/commit/c2c611ca968f3bb03e69f4cfca40636c0a278a6c))
* autobump bio/mosdepth
([#1720](https://www.github.com/snakemake/snakemake-wrappers/issues/1720))
([828f780](https://www.github.com/snakemake/snakemake-wrappers/commit/828f780d44b40f89de3ff278ff9d64fc6455eb1e))
* autobump bio/nonpareil/infer
([#1606](https://www.github.com/snakemake/snakemake-wrappers/issues/1606))
([a19604d](https://www.github.com/snakemake/snakemake-wrappers/commit/a19604d729dc45c2d7b124512dc5219ef44ec261))
* autobump bio/nonpareil/infer
([#1681](https://www.github.com/snakemake/snakemake-wrappers/issues/1681))
([e81c291](https://www.github.com/snakemake/snakemake-wrappers/commit/e81c291494d7eabc0e8384dc83831f614cca2439))
* autobump bio/nonpareil/infer
([#1701](https://www.github.com/snakemake/snakemake-wrappers/issues/1701))
([0fa0b21](https://www.github.com/snakemake/snakemake-wrappers/commit/0fa0b2120ae4f7300eb94a2cbbf88c63fd970abf))
* autobump bio/open-cravat/module
([#1664](https://www.github.com/snakemake/snakemake-wrappers/issues/1664))
([58047f7](https://www.github.com/snakemake/snakemake-wrappers/commit/58047f710ae8ea7e76e701c3f27f05b3b5c256d0))
* autobump bio/open-cravat/run
([#1596](https://www.github.com/snakemake/snakemake-wrappers/issues/1596))
([acdb91e](https://www.github.com/snakemake/snakemake-wrappers/commit/acdb91ec328d5d8f27be985409fc769a1d0e45ad))
* autobump bio/pbmm2/align
([#1553](https://www.github.com/snakemake/snakemake-wrappers/issues/1553))
([03be953](https://www.github.com/snakemake/snakemake-wrappers/commit/03be95318516cecd6b69424e245200bd8280acfb))
* autobump bio/picard/addorreplacereadgroups
([#1571](https://www.github.com/snakemake/snakemake-wrappers/issues/1571))
([a68069e](https://www.github.com/snakemake/snakemake-wrappers/commit/a68069ed69bf618385e36f2eb4d1decc55b93115))
* autobump bio/picard/collectalignmentsummarymetrics
([#1716](https://www.github.com/snakemake/snakemake-wrappers/issues/1716))
([f10e617](https://www.github.com/snakemake/snakemake-wrappers/commit/f10e617b8d5706a7913abb8ccb04e2d38531026d))
* autobump bio/picard/collectgcbiasmetrics
([#1660](https://www.github.com/snakemake/snakemake-wrappers/issues/1660))
([aa83b56](https://www.github.com/snakemake/snakemake-wrappers/commit/aa83b567dc9f37254f00e802dea60551c2f9bac3))
* autobump bio/picard/collecthsmetrics
([#1565](https://www.github.com/snakemake/snakemake-wrappers/issues/1565))
([58ebb45](https://www.github.com/snakemake/snakemake-wrappers/commit/58ebb45b750782fc968535475b96755b366c712d))
* autobump bio/picard/collectinsertsizemetrics
([#1616](https://www.github.com/snakemake/snakemake-wrappers/issues/1616))
([83bbae5](https://www.github.com/snakemake/snakemake-wrappers/commit/83bbae58963ae7d7affa6864bbd0c3aa390f3274))
* autobump bio/picard/collectmultiplemetrics
([#1533](https://www.github.com/snakemake/snakemake-wrappers/issues/1533))
([6163ba6](https://www.github.com/snakemake/snakemake-wrappers/commit/6163ba6c78980e85111a107e4a066659933557cf))
* autobump bio/picard/collectmultiplemetrics
([#1579](https://www.github.com/snakemake/snakemake-wrappers/issues/1579))
([0009a9b](https://www.github.com/snakemake/snakemake-wrappers/commit/0009a9bddd279f9ad214ca59d93d8b39006fc850))
* autobump bio/picard/collectrnaseqmetrics
([#1567](https://www.github.com/snakemake/snakemake-wrappers/issues/1567))
([8d6a569](https://www.github.com/snakemake/snakemake-wrappers/commit/8d6a5694ed861ab9edb00ee135767102174e8cd7))
* autobump bio/picard/collecttargetedpcrmetrics
([#1584](https://www.github.com/snakemake/snakemake-wrappers/issues/1584))
([60c1626](https://www.github.com/snakemake/snakemake-wrappers/commit/60c1626eee96437f9b775f9de2cd5d15a9805923))
* autobump bio/picard/createsequencedictionary
([#1643](https://www.github.com/snakemake/snakemake-wrappers/issues/1643))
([ddb979d](https://www.github.com/snakemake/snakemake-wrappers/commit/ddb979d72f7720ee554ad44d05d66957aad2b275))
* autobump bio/picard/mergesamfiles
([#1690](https://www.github.com/snakemake/snakemake-wrappers/issues/1690))
([cf90f0d](https://www.github.com/snakemake/snakemake-wrappers/commit/cf90f0d07c802d7071724acfc4667fb80a7b28f8))
* autobump bio/picard/mergevcfs
([#1718](https://www.github.com/snakemake/snakemake-wrappers/issues/1718))
([4681800](https://www.github.com/snakemake/snakemake-wrappers/commit/46818001763bea35a99e34d5d76cdb8a5c63995d))
* autobump bio/picard/revertsam
([#1580](https://www.github.com/snakemake/snakemake-wrappers/issues/1580))
([8c9aa09](https://www.github.com/snakemake/snakemake-wrappers/commit/8c9aa090857328b1c53d41c29d817fd2e30fd3ba))
* autobump bio/picard/samtofastq
([#1569](https://www.github.com/snakemake/snakemake-wrappers/issues/1569))
([9157dea](https://www.github.com/snakemake/snakemake-wrappers/commit/9157deaa1f89de327d4efbd797bf1173dbd9ec69))
* autobump bio/picard/sortsam
([#1530](https://www.github.com/snakemake/snakemake-wrappers/issues/1530))
([075a64f](https://www.github.com/snakemake/snakemake-wrappers/commit/075a64fcccb9cc8ed9202fb081c96b35afd19c99))
* autobump bio/pretext/map
([#1721](https://www.github.com/snakemake/snakemake-wrappers/issues/1721))
([b13f290](https://www.github.com/snakemake/snakemake-wrappers/commit/b13f290058329c7cbc5dbe2ca3f32271c802adb2))
* autobump bio/pyroe/makesplicedintronic
([#1564](https://www.github.com/snakemake/snakemake-wrappers/issues/1564))
([de214c6](https://www.github.com/snakemake/snakemake-wrappers/commit/de214c69c156f60579bd7c8f20ef9b1b289572e8))
* autobump bio/pyroe/makeunspliceunspliced
([#1566](https://www.github.com/snakemake/snakemake-wrappers/issues/1566))
([422e811](https://www.github.com/snakemake/snakemake-wrappers/commit/422e8112ca1cf98fbc30e01faf5300622862b7f3))
* autobump bio/qualimap/bamqc
([#1621](https://www.github.com/snakemake/snakemake-wrappers/issues/1621))
([6806b8a](https://www.github.com/snakemake/snakemake-wrappers/commit/6806b8ae9f34315322bbfe50a5e9a81ac1718337))
* autobump bio/salmon/index
([#1532](https://www.github.com/snakemake/snakemake-wrappers/issues/1532))
([dad1a25](https://www.github.com/snakemake/snakemake-wrappers/commit/dad1a25a858933902b0c7fba3fcbef51fd540723))
* autobump bio/samtools/calmd
([#1576](https://www.github.com/snakemake/snakemake-wrappers/issues/1576))
([76c7661](https://www.github.com/snakemake/snakemake-wrappers/commit/76c76614bbd715396f19c38d32b38d8f489b4e84))
* autobump bio/samtools/faidx
([#1698](https://www.github.com/snakemake/snakemake-wrappers/issues/1698))
([665c9c4](https://www.github.com/snakemake/snakemake-wrappers/commit/665c9c4dc375c4c1268703c865e99c047c061252))
* autobump bio/samtools/fastx
([#1644](https://www.github.com/snakemake/snakemake-wrappers/issues/1644))
([26fef49](https://www.github.com/snakemake/snakemake-wrappers/commit/26fef493665b6cafd1a01cc61f062bee10a3c77d))
* autobump bio/samtools/fixmate
([#1686](https://www.github.com/snakemake/snakemake-wrappers/issues/1686))
([3de2261](https://www.github.com/snakemake/snakemake-wrappers/commit/3de2261f9139a451b226f989e499f9b4062b8430))
* autobump bio/samtools/flagstat
([#1612](https://www.github.com/snakemake/snakemake-wrappers/issues/1612))
([85c89a1](https://www.github.com/snakemake/snakemake-wrappers/commit/85c89a17b64010ed54035699cf2fef145ccd9699))
* autobump bio/samtools/sort
([#1528](https://www.github.com/snakemake/snakemake-wrappers/issues/1528))
([11453ad](https://www.github.com/snakemake/snakemake-wrappers/commit/11453ad0b0dbd7b20efabaf5bb0050210ff3b95f))
* autobump bio/samtools/sort
([#1707](https://www.github.com/snakemake/snakemake-wrappers/issues/1707))
([2a9efe5](https://www.github.com/snakemake/snakemake-wrappers/commit/2a9efe5956a6b5eecd9bdc6069f1e17e59e0a5f8))
* autobump bio/samtools/stats
([#1615](https://www.github.com/snakemake/snakemake-wrappers/issues/1615))
([6b1bb79](https://www.github.com/snakemake/snakemake-wrappers/commit/6b1bb79c5c28c40ec2d62abc0543c0961ffa216d))
* autobump bio/samtools/stats
([#1628](https://www.github.com/snakemake/snakemake-wrappers/issues/1628))
([6895834](https://www.github.com/snakemake/snakemake-wrappers/commit/689583407979460b92e3c2c581b7695a35ddab3d))
* autobump bio/samtools/stats
([#1674](https://www.github.com/snakemake/snakemake-wrappers/issues/1674))
([7bd8a71](https://www.github.com/snakemake/snakemake-wrappers/commit/7bd8a718156c2c73ca4228324132ca3527a6ffab))
* autobump bio/samtools/view
([#1525](https://www.github.com/snakemake/snakemake-wrappers/issues/1525))
([2755074](https://www.github.com/snakemake/snakemake-wrappers/commit/275507412b0d4a6769080a8b8e78e0f6a6776c22))
* autobump bio/samtools/view
([#1608](https://www.github.com/snakemake/snakemake-wrappers/issues/1608))
([f582deb](https://www.github.com/snakemake/snakemake-wrappers/commit/f582deb36f56a10d2c1e6c2d789229a987493c01))
* autobump bio/seqkit
([#1610](https://www.github.com/snakemake/snakemake-wrappers/issues/1610))
([cabdc5a](https://www.github.com/snakemake/snakemake-wrappers/commit/cabdc5a900ec70fbd6f0316e983d9905c354d306))
* autobump bio/seqkit
([#1673](https://www.github.com/snakemake/snakemake-wrappers/issues/1673))
([13261f8](https://www.github.com/snakemake/snakemake-wrappers/commit/13261f8391c4834dd6dcc689839201eed9006d1a))
* autobump bio/seqtk/mergepe
([#1585](https://www.github.com/snakemake/snakemake-wrappers/issues/1585))
([c671e66](https://www.github.com/snakemake/snakemake-wrappers/commit/c671e667ca0db03072aa562cff7bef1bfc9577f5))
* autobump bio/snpeff/annotate
([#1624](https://www.github.com/snakemake/snakemake-wrappers/issues/1624))
([34a1005](https://www.github.com/snakemake/snakemake-wrappers/commit/34a1005b6e5f539428f0d4e409f5f98db4b9afce))
* autobump bio/snpeff/annotate
([#1685](https://www.github.com/snakemake/snakemake-wrappers/issues/1685))
([a7b797d](https://www.github.com/snakemake/snakemake-wrappers/commit/a7b797d0860cd336de1805660279e6561217097b))
* autobump bio/snpeff/download
([#1626](https://www.github.com/snakemake/snakemake-wrappers/issues/1626))
([9a649d3](https://www.github.com/snakemake/snakemake-wrappers/commit/9a649d3999b36de89f3ca4311a210f87af31790e))
* autobump bio/snpsift/annotate
([#1593](https://www.github.com/snakemake/snakemake-wrappers/issues/1593))
([bc9c1a6](https://www.github.com/snakemake/snakemake-wrappers/commit/bc9c1a6bde205599beecadd67145a5f61b669e39))
* autobump bio/snpsift/annotate
([#1645](https://www.github.com/snakemake/snakemake-wrappers/issues/1645))
([be76f44](https://www.github.com/snakemake/snakemake-wrappers/commit/be76f44e1cd80653468744511671bce1fd902774))
* autobump bio/snpsift/annotate
([#1675](https://www.github.com/snakemake/snakemake-wrappers/issues/1675))
([baee34b](https://www.github.com/snakemake/snakemake-wrappers/commit/baee34b54edc532bf4201a7879ed0e6be5e31733))
* autobump bio/snpsift/gwascat
([#1613](https://www.github.com/snakemake/snakemake-wrappers/issues/1613))
([1764ca5](https://www.github.com/snakemake/snakemake-wrappers/commit/1764ca5869b8e1625b12e5879a011f0731e10f55))
* autobump bio/snpsift/gwascat
([#1657](https://www.github.com/snakemake/snakemake-wrappers/issues/1657))
([8cc8988](https://www.github.com/snakemake/snakemake-wrappers/commit/8cc8988f04b9817658328e0dbe675ce48d3e7d7e))
* autobump bio/snpsift/varType
([#1583](https://www.github.com/snakemake/snakemake-wrappers/issues/1583))
([ad5d062](https://www.github.com/snakemake/snakemake-wrappers/commit/ad5d062fdc333fbe88c0108d9d77bb5327d7b421))
* autobump bio/sra-tools/fasterq-dump
([#1655](https://www.github.com/snakemake/snakemake-wrappers/issues/1655))
([ceb9ed8](https://www.github.com/snakemake/snakemake-wrappers/commit/ceb9ed8f9eba541b7b6c8464dbd7a1323c0c495c))
* autobump bio/tabix/index
([#1658](https://www.github.com/snakemake/snakemake-wrappers/issues/1658))
([3bcd66d](https://www.github.com/snakemake/snakemake-wrappers/commit/3bcd66d900b786f3dcdbdaf40880b96e08df58c7))
* autobump bio/transdecoder/longorfs
([#1617](https://www.github.com/snakemake/snakemake-wrappers/issues/1617))
([39bb6fc](https://www.github.com/snakemake/snakemake-wrappers/commit/39bb6fc9359d003760b0b92f83df5f911272462b))
* autobump bio/transdecoder/predict
([#1568](https://www.github.com/snakemake/snakemake-wrappers/issues/1568))
([1d19059](https://www.github.com/snakemake/snakemake-wrappers/commit/1d190599e05ef242eba2a415d42720a959b9b46c))
* autobump bio/tximport
([#1632](https://www.github.com/snakemake/snakemake-wrappers/issues/1632))
([bbbb631](https://www.github.com/snakemake/snakemake-wrappers/commit/bbbb63132b172359877c3b292444320bdc977eed))
* autobump bio/varscan/mpileup2indel
([#1556](https://www.github.com/snakemake/snakemake-wrappers/issues/1556))
([5d4f281](https://www.github.com/snakemake/snakemake-wrappers/commit/5d4f2810968c4d59caf657233c9a2a2648713ffd))
* autobump bio/varscan/mpileup2snp
([#1665](https://www.github.com/snakemake/snakemake-wrappers/issues/1665))
([4171043](https://www.github.com/snakemake/snakemake-wrappers/commit/41710437367100bec97330c3cce0f5211c0f34e2))
* autobump bio/varscan/somatic
([#1598](https://www.github.com/snakemake/snakemake-wrappers/issues/1598))
([0a86cbc](https://www.github.com/snakemake/snakemake-wrappers/commit/0a86cbc2bb20b86c9c8138ecf6df2a0addca5ea3))
* autobump bio/vembrane/filter
([#1623](https://www.github.com/snakemake/snakemake-wrappers/issues/1623))
([47e6d58](https://www.github.com/snakemake/snakemake-wrappers/commit/47e6d5864002b7ab3162b2687b5b1da66187b0e6))
* autobump bio/vembrane/table
([#1605](https://www.github.com/snakemake/snakemake-wrappers/issues/1605))
([9c616da](https://www.github.com/snakemake/snakemake-wrappers/commit/9c616daa55ee34376e9ad19873ff47e23588c4c1))
* autobump bio/vep/cache
([#1604](https://www.github.com/snakemake/snakemake-wrappers/issues/1604))
([1681978](https://www.github.com/snakemake/snakemake-wrappers/commit/16819786ffbd6c7d7a54bddaa3fadb481c4d018e))
* autobump bio/vg/construct
([#1529](https://www.github.com/snakemake/snakemake-wrappers/issues/1529))
([6206f18](https://www.github.com/snakemake/snakemake-wrappers/commit/6206f18136d322026075e3796cad486852c62a92))
* autobump bio/vg/sim
([#1573](https://www.github.com/snakemake/snakemake-wrappers/issues/1573))
([7c2b587](https://www.github.com/snakemake/snakemake-wrappers/commit/7c2b587409dbaf75ae29984b8059e4e3d2402ba0))
* autobump bio/vsearch
([#1590](https://www.github.com/snakemake/snakemake-wrappers/issues/1590))
([ed2e49b](https://www.github.com/snakemake/snakemake-wrappers/commit/ed2e49b6aed0a0a1f5d5a6613b66aea067e0ef94))
* autobump bio/vsearch
([#1700](https://www.github.com/snakemake/snakemake-wrappers/issues/1700))
([92f42fc](https://www.github.com/snakemake/snakemake-wrappers/commit/92f42fcfe28e06ecfab070c8539d096fb2aff3a0))
* autobump utils/datavzrd
([#1538](https://www.github.com/snakemake/snakemake-wrappers/issues/1538))
([10a6b0b](https://www.github.com/snakemake/snakemake-wrappers/commit/10a6b0b47943544ebfa291e759390ffa933a7624))
* autobump utils/datavzrd
([#1717](https://www.github.com/snakemake/snakemake-wrappers/issues/1717))
([3ab8832](https://www.github.com/snakemake/snakemake-wrappers/commit/3ab88327c5581bb9809bf7a918011db53ce0d159))
* set version for coolpuppy and update versions for some cooltools
wrappers
([#1546](https://www.github.com/snakemake/snakemake-wrappers/issues/1546))
([41ef6d0](https://www.github.com/snakemake/snakemake-wrappers/commit/41ef6d0573daad70e4edd1601dcca29a9ceba801))
---


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