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perf: autobump bio/samtools/stats #1468

Merged

mergify merged 1 commit into master from autobump/bio-samtools-stats

Jun 30, 2023

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snakedeploy-bot bot commented Jun 30, 2023

Automatic update of bio/samtools/stats.


          perf: update bio/samtools/stats/environment.yaml.

25eae40

snakedeploy-bot bot added the bio/samtools/stats label

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Automatically approving successfull autobump

mergify bot merged commit adc059b into master

mergify bot deleted the autobump/bio-samtools-stats branch

June 30, 2023 01:33

johanneskoester pushed a commit that referenced this pull request


          chore: release 2.1.1 (#1466)

86a08de

🤖 I have created a release \*beep\* \*boop\*
---
###
[2.1.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v2.1.0...v2.1.1)
(2023-06-30)


### Bug Fixes

* bug with -O being used for gap opening penalty and samtools output
directory
([#1450](https://www.github.com/snakemake/snakemake-wrappers/issues/1450))
([c3f227f](https://www.github.com/snakemake/snakemake-wrappers/commit/c3f227ff64ee0d694587b50340424447ee847746))


### Performance Improvements

* autobump bio/bcftools/mpileup
([#1483](https://www.github.com/snakemake/snakemake-wrappers/issues/1483))
([438c39b](https://www.github.com/snakemake/snakemake-wrappers/commit/438c39bd15816b068193664bb37ec8dfd1e21b00))
* autobump bio/bcftools/view
([#1469](https://www.github.com/snakemake/snakemake-wrappers/issues/1469))
([1025cee](https://www.github.com/snakemake/snakemake-wrappers/commit/1025cee51c5fdb005610781f394e36f77d3a4fad))
* autobump bio/bedtools/coveragebed
([#1487](https://www.github.com/snakemake/snakemake-wrappers/issues/1487))
([b9b6123](https://www.github.com/snakemake/snakemake-wrappers/commit/b9b612307055dfc9ee3cf8a6aa6cf51419a1a9de))
* autobump bio/bismark/bam2nuc
([#1491](https://www.github.com/snakemake/snakemake-wrappers/issues/1491))
([b7fe91a](https://www.github.com/snakemake/snakemake-wrappers/commit/b7fe91a39563ad2839d835128a126ff4b7a16833))
* autobump bio/diamond/makedb
([#1495](https://www.github.com/snakemake/snakemake-wrappers/issues/1495))
([5885a0e](https://www.github.com/snakemake/snakemake-wrappers/commit/5885a0e6d00b1005d2ecef4679cfac0119404f10))
* autobump bio/freebayes
([#1478](https://www.github.com/snakemake/snakemake-wrappers/issues/1478))
([dd4c02b](https://www.github.com/snakemake/snakemake-wrappers/commit/dd4c02b81c920e69826c3a86e7ef9f9074b2e76f))
* autobump bio/gatk/applybqsr
([#1470](https://www.github.com/snakemake/snakemake-wrappers/issues/1470))
([7aca9d9](https://www.github.com/snakemake/snakemake-wrappers/commit/7aca9d992096602f4bdf6ec252aa2376c0bfc990))
* autobump bio/gatk/estimatelibrarycomplexity
([#1484](https://www.github.com/snakemake/snakemake-wrappers/issues/1484))
([b06df5f](https://www.github.com/snakemake/snakemake-wrappers/commit/b06df5fd5096097902ef26ffe07520a6728d6850))
* autobump bio/gatk/genomicsdbimport
([#1492](https://www.github.com/snakemake/snakemake-wrappers/issues/1492))
([826e722](https://www.github.com/snakemake/snakemake-wrappers/commit/826e722ee20720483b6a2a894482cde9268dfd18))
* autobump bio/gatk/intervallisttobed
([#1473](https://www.github.com/snakemake/snakemake-wrappers/issues/1473))
([214dd6b](https://www.github.com/snakemake/snakemake-wrappers/commit/214dd6bb41ae07d985d603f7f04e53139ac0ee50))
* autobump bio/gatk/learnreadorientationmodel
([#1494](https://www.github.com/snakemake/snakemake-wrappers/issues/1494))
([e2623fd](https://www.github.com/snakemake/snakemake-wrappers/commit/e2623fd5111df37291918ca6768279ae98f0b694))
* autobump bio/gatk/splitintervals
([#1481](https://www.github.com/snakemake/snakemake-wrappers/issues/1481))
([444dda4](https://www.github.com/snakemake/snakemake-wrappers/commit/444dda46364af8f2ed6baa42b6f0586b51b4808f))
* autobump bio/gatk/variantannotator
([#1489](https://www.github.com/snakemake/snakemake-wrappers/issues/1489))
([03b3fb5](https://www.github.com/snakemake/snakemake-wrappers/commit/03b3fb581e4bb062ce2128215a898c692650343f))
* autobump bio/gatk/variantrecalibrator
([#1496](https://www.github.com/snakemake/snakemake-wrappers/issues/1496))
([3748dec](https://www.github.com/snakemake/snakemake-wrappers/commit/3748dec7b916254d8777c16c37114b8d0a618476))
* autobump bio/minimap2/aligner
([#1477](https://www.github.com/snakemake/snakemake-wrappers/issues/1477))
([75c6265](https://www.github.com/snakemake/snakemake-wrappers/commit/75c6265df3f888acd849a1617164b51c42cd3a0d))
* autobump bio/picard/collectalignmentsummarymetrics
([#1475](https://www.github.com/snakemake/snakemake-wrappers/issues/1475))
([06e9c4b](https://www.github.com/snakemake/snakemake-wrappers/commit/06e9c4be45b3c6596e9c0fdde2eacb6eb2a83bdb))
* autobump bio/picard/mergevcfs
([#1465](https://www.github.com/snakemake/snakemake-wrappers/issues/1465))
([dbbc182](https://www.github.com/snakemake/snakemake-wrappers/commit/dbbc182bab3b3496a1cbbbf11816382a93fcc5f2))
* autobump bio/pretext/map
([#1493](https://www.github.com/snakemake/snakemake-wrappers/issues/1493))
([7fcae7f](https://www.github.com/snakemake/snakemake-wrappers/commit/7fcae7f60fbbdc7073af5e31b1bd1dbc2dacf96b))
* autobump bio/qualimap/bamqc
([#1471](https://www.github.com/snakemake/snakemake-wrappers/issues/1471))
([4fe5fdc](https://www.github.com/snakemake/snakemake-wrappers/commit/4fe5fdcb0a4aaa0229c52d50188402030ed656c3))
* autobump bio/samtools/depth
([#1486](https://www.github.com/snakemake/snakemake-wrappers/issues/1486))
([6d23daf](https://www.github.com/snakemake/snakemake-wrappers/commit/6d23daf52b1746f64ffb4f01f66202cd38bdb12f))
* autobump bio/samtools/stats
([#1468](https://www.github.com/snakemake/snakemake-wrappers/issues/1468))
([adc059b](https://www.github.com/snakemake/snakemake-wrappers/commit/adc059b4758b1374eb445d0652194b68a8826a14))
* autobump bio/snpsift/annotate
([#1480](https://www.github.com/snakemake/snakemake-wrappers/issues/1480))
([a60f667](https://www.github.com/snakemake/snakemake-wrappers/commit/a60f66793d05dd707b8834041cb69a0c325fe49b))
* autobump bio/snpsift/dbnsfp
([#1490](https://www.github.com/snakemake/snakemake-wrappers/issues/1490))
([8e8af31](https://www.github.com/snakemake/snakemake-wrappers/commit/8e8af3118fc6e8f6eeb00bd3412e780f775d36e1))
* autobump bio/varscan/mpileup2indel
([#1472](https://www.github.com/snakemake/snakemake-wrappers/issues/1472))
([c0a7c47](https://www.github.com/snakemake/snakemake-wrappers/commit/c0a7c475e70e978cbe46e67afa3b70bc16019dfb))
* autobump bio/varscan/mpileup2snp
([#1476](https://www.github.com/snakemake/snakemake-wrappers/issues/1476))
([a439e5f](https://www.github.com/snakemake/snakemake-wrappers/commit/a439e5f8b8a5362c28751079beb544964a0af7a4))
* autobump bio/varscan/somatic
([#1482](https://www.github.com/snakemake/snakemake-wrappers/issues/1482))
([18671ad](https://www.github.com/snakemake/snakemake-wrappers/commit/18671adc6821aad751a67845b0e453456bea6475))
* autobump bio/vg/kmers
([#1479](https://www.github.com/snakemake/snakemake-wrappers/issues/1479))
([aa00d14](https://www.github.com/snakemake/snakemake-wrappers/commit/aa00d1488989e64ce215672c86bbc94d169f6f33))
* autobump bio/xsv
([#1485](https://www.github.com/snakemake/snakemake-wrappers/issues/1485))
([a0baa27](https://www.github.com/snakemake/snakemake-wrappers/commit/a0baa27897c3e11d439a5bbb3dd138029d869afe))
* update datavzrd
([#1497](https://www.github.com/snakemake/snakemake-wrappers/issues/1497))
([143a9c8](https://www.github.com/snakemake/snakemake-wrappers/commit/143a9c8caadb5f4391b351dfc0786c896c751c3f))
---


This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

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bio/samtools/stats