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fix: add support for ht2l indexes in hisat wrapper #5823

fix: add support for ht2l indexes in hisat wrapper

fix: add support for ht2l indexes in hisat wrapper #5823

Triggered via pull request October 29, 2024 18:05
Status Success
Total duration 1m 32s
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qc.yml

on: pull_request
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
formatting
/usr/share/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
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Mamba support is still experimental and can result in differently solved environments!
linting
The following actions use a deprecated Node.js version and will be forced to run on node20: conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
linting
/usr/share/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
linting
Mamba support is still experimental and can result in differently solved environments!