Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Deprecate SQTagUtil #1214

Merged
merged 1 commit into from
Nov 14, 2018
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions src/main/java/htsjdk/samtools/SQTagUtil.java
100644 → 100755
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,9 @@
* Utility methods for encoding and decoding the SQ tag value of SAMRecord.
*
* @author [email protected]
* @deprecated since 11/2018. SQ is a reserved tag that shouldn't be used and this code untested.
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Suggested change
* @deprecated since 11/2018. SQ is a reserved tag that shouldn't be used and this code untested.
* @deprecated since 11/2018. SQ is a deprecated tag that should no longer be used. This code is untested and and unsupported. There is no replacement for these utilities.

*/
@Deprecated
public class SQTagUtil {
/**
* The ordinals of these are stored in the high-order 2 bits of each byte of the SQ tag.
Expand Down