remove CramCompressionRecord.tagIds (#1345)

samtools · May 6, 2019 · 0b9fe0d · 0b9fe0d
1 parent 4f62add
commit 0b9fe0d
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 7 deletions.
diff --git a/src/main/java/htsjdk/samtools/cram/build/CompressionHeaderFactory.java b/src/main/java/htsjdk/samtools/cram/build/CompressionHeaderFactory.java
@@ -253,20 +253,20 @@ public int compare(final byte[] o1, final byte[] o2) {
             }
 
             Arrays.sort(record.tags, comparator);
-            record.tagIds = new byte[record.tags.length * 3];
+            final byte[] tagIds = new byte[record.tags.length * 3];
 
             int tagIndex = 0;
             for (int i = 0; i < record.tags.length; i++) {
-                record.tagIds[i * 3] = (byte) record.tags[tagIndex].keyType3Bytes.charAt(0);
-                record.tagIds[i * 3 + 1] = (byte) record.tags[tagIndex].keyType3Bytes.charAt(1);
-                record.tagIds[i * 3 + 2] = (byte) record.tags[tagIndex].keyType3Bytes.charAt(2);
+                tagIds[i * 3] = (byte) record.tags[tagIndex].keyType3Bytes.charAt(0);
+                tagIds[i * 3 + 1] = (byte) record.tags[tagIndex].keyType3Bytes.charAt(1);
+                tagIds[i * 3 + 2] = (byte) record.tags[tagIndex].keyType3Bytes.charAt(2);
                 tagIndex++;
             }
 
-            MutableInt count = map.get(record.tagIds);
+            MutableInt count = map.get(tagIds);
             if (count == null) {
                 count = new MutableInt();
-                map.put(record.tagIds, count);
+                map.put(tagIds, count);
             }
             count.value++;
             record.tagIdsIndex = count;

diff --git a/src/main/java/htsjdk/samtools/cram/structure/CramCompressionRecord.java b/src/main/java/htsjdk/samtools/cram/structure/CramCompressionRecord.java
@@ -95,7 +95,6 @@ public class CramCompressionRecord {
     public int templateSize;
 
     public ReadTag[] tags;
-    public byte[] tagIds;
     public MutableInt tagIdsIndex;
 
     public int sliceIndex = 0;