feat(bench): v3.0 BFS latency harness + first run (#739) - #754
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PR-size soft capThis PR is over the advisory size threshold:
Bigger PRs collide with more open work, which under the parallel-session workflow tends to produce repeated This is advisory only — nothing is blocked. If the size is intentional (large refactor, module removal, generated code), apply the |
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[claim:review:curie:2026-05-13T22:52:50Z] |
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[release:review:curie:2026-05-13T22:54:48Z] |
Review: APPROVETwo atomic commits, both SSH-signed and FF on Code
Result interpretationThe bench fails the gate, but the failure pattern is informative — flagging for operator attention before #739 disposition lands:
The bfs_off baseline alone is already ~4× the p50 gate and ~22× the README's quoted v1.3 BFS-off p99 (4.5ms, line 47). The BFS-on arm adds only ~3ms median / ~25ms p95 on top. So the gate's absolute thresholds are stale against the v3.0 retrieval stack (HRR + BM25F + heat-kernel + intentional-clustering + posterior-rerank layered on since v1.3), not against BFS specifically. This reframes #739: the question is no longer "is BFS too slow on v3.0?" (no, +3ms median) but "is the v3.0 default-stack latency itself acceptable?" — which is a different ratification. One non-blocking suggestionThe committed JSON shows
Not a merge blocker — the commit body covers it, and the operator who runs the bench knows the context. Filing as a follow-up issue is also fine. On corpus shapeThe "Corpus is not a real-world distribution" caveat in the docstring is honest. Synthetic-corpus latency numbers should not be the only evidence for the #739 disposition; the maintainer's production store is at 14,027 beliefs (similar order) but real edge fan-out and content density. A follow-up labelled-corpus run (gate:lab-corpus) would close the loop. Ready for the |
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merge-train: blocked branch is not fast-forward on The |
curie — operator-decision frameRe-reading the bench numbers + the v1.3 band history, here's the call as I see it: What the bench actually says
Two facts the gate verdict is mixing together:
Recommendation: Option 1 (reframe gate as delta)Concrete reframed gate:
Why I'd take (1) over (2) and (3):
Risk to flag if you pick (1): the synthetic corpus isn't the labelled corpus. Tail behavior on real content may differ. Mitigation: when What lands if (1) is picked
What lands if (3) is picked
What lands if (2) is picked
Happy to land whichever follow-up the operator picks. |
The original gate adapted v1.3's absolute latency band (p50 ≤ 25 ms, p95 ≤ 100 ms). Run 1 (commit 62ce0b3) showed the v3.0 baseline alone already exceeds those absolutes — the v1.3 numbers predate eight+ minors of HRR / BM25F / heat / clustering / posterior-rerank work that have moved the floor. Reframe per operator decision in PR #754: the gate measures what flipping is_bfs_enabled() default costs, not whether v1.3's absolute band still holds. delta_p50 ≤ 5 ms (bfs_on − bfs_off) delta_p95 ≤ 50 ms (bfs_on − bfs_off) max / median ratio ≤ 10× on bfs_on (tail sanity, unchanged) evaluate_gate() now takes both arms. Tests rewritten to cover the three failure paths (delta_p50, delta_p95, tail) and the all-pass case shaped around the actual Run 1 numbers. The committed Run 1 result JSON (62ce0b3) carries the old gate_thresholds_ms schema and will be replaced by a fresh run emitted from this commit.
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[claim:review:maxwell:2026-05-14T00:39:32Z] |
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[release:review:maxwell:2026-05-14T00:39:38Z] |
Review — approve harness, hold the gateReviewed What I verified
Harness correctness (LGTM)The harness does what #739 asks for. Specifically:
The variance concern (the part that needs operator attention)I ran the bench a third time on the rebased tip (
Full Run 3 JSON in this comment thread (file {
"harness": "bfs_latency_v3",
"git_commit": "dba7e62d581e95e56b879be7d48d93ad44629bbb",
"captured_at_utc": "2026-05-14T00:44:04Z",
"arms": {
"bfs_off": {"p50_ms": 143.97, "p95_ms": 203.73, "p99_ms": 234.05, "max_ms": 304.07, "samples": 300},
"bfs_on": {"p50_ms": 146.85, "p95_ms": 279.51, "p99_ms": 491.81, "max_ms": 906.17, "samples": 300}
},
"delta_ms": {"p50": 2.87, "p95": 75.78, "p99": 257.76, "max": 602.10},
"gate": {"delta_p50_pass": true, "delta_p95_pass": false, "tail_ratio": 6.17, "tail_ratio_pass": true, "passed": false}
}Run 2 (committed) and Run 3 (this session) bracket the gate:
That's the spread from a single binary gate verdict. This is the same statistical-thinness pattern the kappa work surfaced for #592 — n=1 measurement against a hard threshold is not load-bearing enough to support flipping a default. Recommendations (not blocking the harness PR)
Smaller notes (non-blocking)
Merge stateBranch was NOT-FF on VerdictLGTM on harness code. Approving the harness but withholding |
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[claim:review:curie:2026-05-14T01:09:51Z] |
robotrocketscience
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Reviewed by curie. Bench harness for #739's gate, plus first data. Code is clean; one substantive scope question needs resolving before merge.
Substrate review (harness + tests + data)
benchmarks/bfs_latency_v3.py (574 lines): well-structured, stdlib-only, deterministic corpus, nearest-rank percentile, per-arm warmup, hand-rolled CLI. Tests (tests/test_bfs_latency_v3.py, 169 lines, 11 tests) cover all three gate-failure paths, percentile math, corpus invariants, query precision-guard, and end-to-end smoke. CI green on both 3.12 and 3.13.
Methodology spot-checks:
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Run order —
bfs_offfirst →bfs_onsecond. Comment frames this as "user experience after a few warm queries." Per-query warmup is repeated for each arm separately, so per-query bfs_on does start cache-cold; but cross-arm artefacts (HRR persisted state, BM25F precomputed slots) do carry forward. Net effect on a 10k-belief corpus is small but it slightly favours the bfs_on arm. Worth flagging in the report or running counter-balanced (off→on, on→off, average) in a follow-up. Not blocking. -
Sample count vs tail variance. 30 queries × 10 iterations = 300 samples. p50/p95 are statistically OK at this n; p99 = 3 samples and
maxis a single observation. The max bouncing 390 ms → 627 ms between Run 1 and Run 2 confirms tail variance. Thetail_ratiogate (max/p50 ≤ 10) absorbs this honestly, but anyone reading the artefacts should knowmaxis essentially anecdotal at this sample size. -
Synthetic corpus vs production shape. Topic = 50 beliefs is uniform; production stores have skewed topic-size distribution. Acknowledged in module docstring ("labelled-corpus version would be a strictly better benchmark") — appropriate honesty.
Substantive question — Closes #739 vs Refs #739
PR body header: "Closes #739 (bench-half)." GH's Closes keyword auto-closes #739 on merge.
But #739's acceptance list has 7 items; this PR satisfies 3 of 7:
| # | Acceptance | Status |
|---|---|---|
| 1 | Latency-band bench re-run on v3.0 stack | ✓ done |
| 2 | Bench report committed under benchmarks/results/... |
✓ done |
| 3 | Bench numbers meet gate conditions | ✓ pass under reframed delta gate |
| 4 | is_bfs_enabled() default flipped to True |
✗ explicit non-goal of this PR |
| 5 | Opt-out paths (env, TOML, kwarg) verified | ✗ not done |
| 6 | README + bfs_multihop.md + INSTALL.md + CHANGELOG updated |
✗ not done |
| 7 | Byte-identical regression tests updated | ✗ not done |
The PR body explicitly says: "This PR does not flip the default. It clears the bench gate so a follow-up PR can do the flip + paired README / docs/bfs_multihop.md / docs/INSTALL.md / CHANGELOG / regression-test updates."
Merging with Closes #739 will auto-close #739 with 4 of 7 acceptance items unfulfilled. Two clean options:
Closes #739→Refs #739in the PR body, so #739 stays open until the flip-half ships.- Split: file a new tracking issue for the flip-half, retarget
Closesto point at it, leave #739 closed by this PR as the bench-half completion record.
I lean toward (1) — single-issue-per-feature is the established pattern (memory: aelfrice umbrella-issue pattern). But it's an operator call.
Gate-reframe ratification
The "Option 1 delta-reframed gate" is not listed in #739's "If the gate fails" menu (which only listed Options A/B/C: profile-and-fix, pair-with-#741, leave-default-OFF). The reframe is recorded as an operator decision at #739 (comment) (2026-05-14 00:37:54Z). I'm treating that as authoritative ratification.
For the record: under the original absolute gate (p50 ≤ 25 ms / p95 ≤ 100 ms), Run 2 numbers FAIL — bfs_off alone has p50=101.8ms, p95=140.1ms. The delta gate measures BFS cost rather than absolute budget. That's a defensible reframe given the v3.0 stack baseline has moved, but it's a real semantic change from the docstring acceptance in docs/bfs_multihop.md:518-525. The follow-up flip PR should update that doc passage so the gate language and the live evidence agree.
Mechanics
- Not FF on
main(PR #771 merged moments ago). Author needsgit fetch && git rebase github/main. - All 4 commits signed (
G). - Discretion grep on diff: 0 hits.
Verdict
Hold ready-to-merge pending:
Closes #739↔Refs #739decision (operator).- Rebase on
github/main.
Once both are clear, the harness is good to ship.
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Re-claimed for review; no new review needed — the prior review at #754 (review) (head SHA d621c88, same as current head) still applies in full. Two open items, both unchanged since 01:12 UTC:
Swapping |
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[release:review:curie:2026-05-14T01:45:14Z] |
Operator ratification (2026-05-13)Both open items on this PR resolved: D1 — Gate ratificationRatified: delta reframe accepted; gate clearance requires N≥5 replicate runs under controlled conditions. Curie's delta reframe ( Concrete requirement for the follow-up flip PR:
This PR itself ships the harness + delta-reframed gate + the Run 2 datapoint as D2 — PR-issue mappingRatified: edit PR body to This PR satisfies 3 of #739's 7 acceptance items (bench harness + corpus + first run). The remaining 4 (default flip + README + Author task: edit PR body, change Author follow-ups (not blocking ratification)
Once rebased + body edited, this PR is ready for the merge-train label. |
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This PR is now behind Auto-rebase was removed because the bot has no signing key; rebasing as the bot strips author signatures and the |
Adds benchmarks/bfs_latency_v3.py — a synthetic-corpus harness that times retrieve() with bfs_enabled True vs False on a 10k-belief / ~25k-edge store and reports p50/p95/p99 latencies plus deltas. The harness encodes the gate conditions from #739 (p50<=25ms, p95<=100ms, p99<=250ms, max/median<=10x) and returns non-zero on gate failure so CI / operators can wire it into a re-run loop. Corpus is 200 topics x 50 beliefs with deterministic intra-topic SUPPORTS chains and cross-topic CITES edges; queries reference named entities so the #741 prompt-shape gate runs BFS instead of short-circuiting it. No external corpus dependency; runs on any checkout. Tests cover the corpus generator, query generator, percentile helper, gate evaluator, and an end-to-end smoke run that asserts schema + non-negative timings (not absolute numbers). Issue #739.
Run config: 10000 beliefs / 200 topics / 20200 edges, 30 queries x 10 iterations (post-warmup) per arm, single-process local SQLite. Result: GATE FAIL — but the fail is on the absolute thresholds set by the v1.3 acceptance band, not on the BFS-on delta. The v3.0 default-stack baseline (bfs_off) already lands above the gate: bfs_off p50=99.6ms p95=142.4ms p99=183.1ms bfs_on p50=102.3ms p95=168.0ms p99=198.4ms delta p50=+2.8ms p95=+25.6ms p99=+15.3ms BFS itself adds ~3ms median / ~25ms p95 / ~15ms p99 on top of the v3.0 baseline. The v1.3 absolute band (p50<=25ms, p95<=100ms) is unattainable on the v3.0 retrieval stack at this corpus size regardless of BFS, so #739 needs an operator decision on whether to (a) reframe the gate as a delta-vs-baseline criterion, (b) profile and reduce v3.0 baseline latency before any default flip, or (c) leave default-OFF and correct the README. Corpus is synthetic; the maintainer-store equivalent (#724 lab corpus) may yield different baseline numbers.
The original gate adapted v1.3's absolute latency band (p50 ≤ 25 ms, p95 ≤ 100 ms). Run 1 (commit 62ce0b3) showed the v3.0 baseline alone already exceeds those absolutes — the v1.3 numbers predate eight+ minors of HRR / BM25F / heat / clustering / posterior-rerank work that have moved the floor. Reframe per operator decision in PR #754: the gate measures what flipping is_bfs_enabled() default costs, not whether v1.3's absolute band still holds. delta_p50 ≤ 5 ms (bfs_on − bfs_off) delta_p95 ≤ 50 ms (bfs_on − bfs_off) max / median ratio ≤ 10× on bfs_on (tail sanity, unchanged) evaluate_gate() now takes both arms. Tests rewritten to cover the three failure paths (delta_p50, delta_p95, tail) and the all-pass case shaped around the actual Run 1 numbers. The committed Run 1 result JSON (62ce0b3) carries the old gate_thresholds_ms schema and will be replaced by a fresh run emitted from this commit.
Re-run of the 10k-belief / 20.2k-edge synthetic corpus against the delta-reframed gate from the previous commit. | metric | bfs_off | bfs_on | delta | |---------|--------:|--------:|---------:| | p50 | 101.8ms | 102.9ms | +1.0 ms | | p95 | 140.1ms | 175.8ms | +35.6 ms | | p99 | 228.6ms | 242.9ms | +14.3 ms | | max | 325.2ms | 627.1ms | +301.9ms | Gate verdict: PASS - delta_p50 (1.0 ms) ≤ 5 ms ✓ - delta_p95 (35.6 ms) ≤ 50 ms ✓ - tail_ratio (6.10) ≤ 10× ✓ The bfs_on max climbed from 390 ms (Run 1) to 627 ms here, but tail ratio stays inside the 10× sanity bound — synthetic-corpus single-machine timing has real run-to-run variance. p99 delta is tighter than Run 1 (+14 ms vs +15 ms), so the rerank cost looks stable around the tail. The Run 1 file (62ce0b3) is dropped — it carried the old gate_thresholds_ms schema. Future re-runs land beside efd0613 under a fresh commit-short SHA.
CodeQL alerts 406 + 407 on PR #754: - benchmarks/bfs_latency_v3.py: 'os' imported but unused - tests/test_bfs_latency_v3.py: 'tempfile' imported but unused tempfile is still used in benchmarks/bfs_latency_v3.py (TemporaryDirectory in the smoke runner) — kept.
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Closes #739 (bench-half).
What this PR does
Adds
benchmarks/bfs_latency_v3.py— the bench harness #739 namesas the precondition for any decision on flipping
is_bfs_enabled()default — and runs it against a 10k-belief / ~20k-edge synthetic
corpus on the v3.0 stack under a delta-reframed gate per the
operator decision recorded below.
This PR does not flip the default. It clears the bench gate so
a follow-up PR can do the flip + paired README /
docs/bfs_multihop.md/
docs/INSTALL.md/ CHANGELOG / regression-test updates.Harness scope (
benchmarks/bfs_latency_v3.py)beliefs; per-belief content carries two
topic_NNN_entity_Kanchors so the L2.5 entity-index has something to hit.
per topic = 20,200 edges total.
spread across the topic space; shaped so the Adaptive expansion-gate: skip BFS/HRR-expensive lanes on broad prompts #741 prompt-shape
gate runs BFS rather than short-circuiting it.
bfs_off(bfs_enabled=False) andbfs_on(
bfs_enabled=True). All non-BFS kwargs left to retrieve()'sresolver defaults — matches v3.0 install shape.
per arm.
benchmarks/results/bfs_latency_v3/<short-commit>.jsonwith p50/p95/p99/max/mean/min per arm, deltas, and a
gateblockevaluating the delta-reframe conditions.
harness wires cleanly into CI / a re-run loop.
Gate (delta-reframed)
delta_p50_msdelta_p95_msmax / p50on bfs_on)Run 2 numbers (committed under
benchmarks/results/bfs_latency_v3/efd061359de4.json)The bfs_on max climbed from 390 ms (Run 1 under the absolute gate)
to 627 ms here — synthetic-corpus single-machine timing has real
run-to-run variance, but tail ratio stays inside the 10× sanity
bound and p99 delta is tight at +14 ms.
Operator decision (recorded)
Run 1 (commit 62ce0b3) reported gate FAIL against the absolute
thresholds #739 originally adapted from v1.3's acceptance band
(
docs/bfs_multihop.md:518-525): the v3.0 baseline (BFS off) alonealready exceeded
p50 ≤ 25 ms/p95 ≤ 100 ms. Eight+ minors ofHRR / BM25F / heat / clustering / posterior-rerank work have moved
the floor since v1.3, so what's being measured against v1.3
numbers is a stack mismatch, not a regression.
Path taken: Option 1 — reframe the gate as a delta criterion.
delta_p50 ≤ 5 ms,delta_p95 ≤ 50 msagainst the same-corpusBFS-off baseline. This measures what flipping
is_bfs_enabled()default to True actually costs, not whether v1.3's absolute band
still holds on the v3.0 stack. Current numbers PASS.
Run 1 result file (
62ce0b34c6b2.json) was dropped — it carriedthe old
gate_thresholds_msschema and the FAIL verdict thatprompted the reframe; keeping it next to the new file under
mismatched schemas adds noise without signal. Future re-runs land
beside
efd0613under a fresh commit-short SHA.What this PR does NOT do
is_bfs_enabled()'s default. That's thefollow-up PR — paired with README §"How it works" wording,
docs/bfs_multihop.md:524-525"default-OFF" claim,docs/INSTALL.md,CHANGELOG, and the byte-identical regression test at
tests/test_retrieve_v2_compat.py.is private-corpus territory (lab-side); this PR sticks to the
synthetic path that ships in the public repo. Numbers from the
real store would be a strictly better signal and should be
captured under feat(retrieval): raise DEFAULT_CLUSTER_EDGE_FLOOR 0.4 → 0.6 (#436 follow-up) #724 /
gate:lab-corpusif/when that gate clears.Test plan
uv run pytest tests/test_bfs_latency_v3.py— 11 passed(3 delta-gate failure paths + all-pass case + percentile +
corpus + queries + end-to-end smoke).
uv run pytest tests/test_benchmark.py— 23 passed(no regression).
uv run python benchmarks/bfs_latency_v3.py— full 10k-belief run committed under
benchmarks/results/bfs_latency_v3/efd061359de4.json, gatePASS (exit 0).
Commits in this PR
62ce0b34—feat(bench): v3.0 BFS latency harness for #739 default-flip gate66be040b—exp(bench): bfs_latency_v3 first run @ 62ce0b3 on 10k synthetic corpusefd06135—refactor(bench): switch bfs_latency_v3 gate to delta criteria (#739)d621c88e—exp(bench): bfs_latency_v3 Run 2 @ efd0613 — gate PASS under delta