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fix: add missing properties to AlignedSegment type stubs #1273

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merged 2 commits into from
Apr 19, 2024
Merged

fix: add missing properties to AlignedSegment type stubs #1273

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64cb5dc
fix: add missing properties to AlignedSegment interface
msto Mar 16, 2024
69503f5
More properties added during type hints PR developement
jmarshall Apr 19, 2024
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8 changes: 8 additions & 0 deletions pysam/libcalignedsegment.pyi
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Original file line number Diff line number Diff line change
Expand Up @@ -88,8 +88,12 @@ class AlignedSegment:
is_proper_pair: bool
is_unmapped: bool
mate_is_unmapped: bool
is_mapped: bool
mate_is_mapped: bool
is_reverse: bool
mate_is_reverse: bool
is_forward: bool
mate_is_forward: bool
is_read1: bool
is_read2: bool
is_secondary: bool
Expand Down Expand Up @@ -121,6 +125,10 @@ class AlignedSegment:
@property
def query_alignment_end(self) -> int: ...
@property
def modified_bases(self) -> Optional[Dict[Tuple[str, int, str], List[Tuple[int, int]]]]: ...
@property
def modified_bases_forward(self) -> Optional[Dict[Tuple[str, int, str], List[Tuple[int, int]]]]: ...
@property
def query_alignment_length(self) -> int: ...
def infer_query_length(self) -> Optional[int]: ...
def infer_read_length(self) -> Optional[int]: ...
Expand Down