CReSCENT is an intuitive and scalable web portal incorporating a containerized pipeline execution engine for standardized analysis of single-cell RNA sequencing (scRNA-seq) data. Nucleic Acids Res, 2020.
This repository contains applications implemented for CReSCENT. Scripts work as one-line-commands using the R library(optparse). We also provide a Graphic User Interface (GUI) web version ready to be used without the user needing to install any sotware at https://crescent.cloud. CReSCENT's GUI has its own repository at https://github.com/pughlab/crescent-frontend and extended documentation at https://pughlab.github.io/crescent-frontend/.
This repository has three main directories: bin, doc and examples. bin contains the applications code, doc contains documentation, including dependencies, and examples provides links to inputs and expected outputs.
Contains codes to run CReSCENT analysis pipelines as one-line-command applications.
Contains documentation associated with bin/codes, including parameters and dependencies.
Contains examples associated with bin/codes, such as links to example infiles and outfiles.
Please use these templates to:
report bugs
request features
Javier Diaz (https://github.com/jdime)