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1. PughLabReadme PughLabReadme Public

   Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

   2

2. cbioportal cbioportal Public

   Forked from cBioPortal/cbioportal

   cBioPortal for Cancer Genomics

   Java 2

3. ConsensusCruncher ConsensusCruncher Public

   ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

   Jupyter Notebook 21 10

4. VisCap VisCap Public

   VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

   R 22 12

5. bamgineer bamgineer Public

   Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

   Python 37 14

6. crescent crescent Public

   The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

   R 8 4