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[breaking] output more topological elements #1019

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merged 67 commits into from
Apr 3, 2024
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74b1278
deprecate older file formats.
jonahm-LANL Mar 10, 2024
fd7ad48
get rid of some of those hardcoded arrays...
jonahm-LANL Mar 10, 2024
7bb8c08
remove more hardcoded initializer lists
jonahm-LANL Mar 10, 2024
429260a
update error messages
jonahm-LANL Mar 10, 2024
061c0bf
some more careful initialization without hardcoding
jonahm-LANL Mar 10, 2024
bfe5427
remove some unused vars
jonahm-LANL Mar 10, 2024
a3f3469
unused var
jonahm-LANL Mar 10, 2024
243d94e
remove more hardcoded stuff
jonahm-LANL Mar 10, 2024
1864e79
TensorSize
jonahm-LANL Mar 10, 2024
732500f
switch to using an array in VarInfo
jonahm-LANL Mar 10, 2024
534e38b
formatting
jonahm-LANL Mar 11, 2024
41a9db2
lint
jonahm-LANL Mar 11, 2024
e5e35f0
Merge branch 'develop' into jmm/yet-more-io-cleanup
jonahm-LANL Mar 11, 2024
4f12e29
generalize how shapes are set
jonahm-LANL Mar 13, 2024
e87f598
remove prefilling
jonahm-LANL Mar 13, 2024
d802f4b
move FillShape
jonahm-LANL Mar 14, 2024
5d49b49
clean up compression
jonahm-LANL Mar 14, 2024
e994a31
extend dim finally
jonahm-LANL Mar 14, 2024
fcf37ea
Merge branch 'develop' into jmm/output-nodes-2
Yurlungur Mar 18, 2024
a45f5ef
add unit tests... more to come
jonahm-LANL Mar 18, 2024
072fd30
Merge branch 'jmm/output-nodes-2' of github.com:lanl/parthenon into j…
jonahm-LANL Mar 18, 2024
6b4c66f
switch ndim as output by VarInfo so it doesn't contain the block inde…
jonahm-LANL Mar 19, 2024
dae3ea9
Fill in current utilized capability
jonahm-LANL Mar 19, 2024
bb0e69b
swap VarInfo to using just the straight up array nx
jonahm-LANL Mar 19, 2024
46b65e4
output utils now contains everything we need... some yuckiness ahead …
jonahm-LANL Mar 19, 2024
9c86036
Rename restart to restart_hdf5
pgrete Mar 15, 2024
2be7e5d
WIP abstract RestartReader
pgrete Mar 18, 2024
b882570
WIP separating RestartReader
pgrete Mar 18, 2024
70671c9
Make RestartReader abstract
pgrete Mar 19, 2024
7f78148
Add Changelog
pgrete Mar 19, 2024
b632886
VarInfo now produces padded shapes for topological elements
jonahm-LANL Mar 19, 2024
1fe6c29
Address comments
pgrete Mar 20, 2024
aa315cc
Merge branch 'develop' into pgrete/refactor-restart
Yurlungur Mar 21, 2024
93fc846
Merge in restart refactor
jonahm-LANL Mar 21, 2024
f7c5a1f
Merge branch 'develop' into jmm/output-nodes-2
Yurlungur Mar 21, 2024
be01593
merge develop
jonahm-LANL Mar 21, 2024
2fa83e6
added way to get vec of var info and moved some code out of header in…
jonahm-LANL Mar 25, 2024
fcb15d6
PaddedShape exposed. Broke xdmf will fix.
jonahm-LANL Mar 25, 2024
bdd326a
cleanup and fix output utils, generalize packorunpack var
jonahm-LANL Mar 25, 2024
3a629db
switch restarts over to use VarInfo and topological elements
jonahm-LANL Mar 25, 2024
a098bff
fix xdmf at least for cell centered
jonahm-LANL Mar 25, 2024
0e40f0c
changelog
jonahm-LANL Mar 25, 2024
2fcd219
update output version and fix constexpr issue on clang
jonahm-LANL Mar 25, 2024
23c7fe3
lroberts comments
jonahm-LANL Mar 26, 2024
e383761
oops padded shapes shouldn't modify vars not tied to a topological el…
jonahm-LANL Mar 26, 2024
14c751f
Write topological location as an attribute
jonahm-LANL Mar 26, 2024
f24981d
README
jonahm-LANL Mar 27, 2024
2651182
python can interpolate and plot edge/face/node data
jonahm-LANL Mar 28, 2024
101be68
tensor type...
jonahm-LANL Mar 28, 2024
b5178e6
oops needs type
jonahm-LANL Mar 28, 2024
35427db
remove one-sided MPI
jonahm-LANL Mar 28, 2024
c41eee7
fix index.rst
jonahm-LANL Mar 28, 2024
deac3bc
xdmf fix for node centered data hopefully
jonahm-LANL Mar 28, 2024
c87de36
changelog for breaking, update CC
jonahm-LANL Mar 28, 2024
3e3154c
merge develop
jonahm-LANL Mar 28, 2024
a68a782
disable vector tag in xdmf if not cell-centered
jonahm-LANL Mar 28, 2024
27a580f
actually short-circuit special casing for vector logic
jonahm-LANL Mar 28, 2024
21b4a9d
caveat edge locations
jonahm-LANL Mar 28, 2024
45a896d
warning
jonahm-LANL Mar 28, 2024
492cb70
more verbose error in phdf
jonahm-LANL Mar 28, 2024
242207f
stupid python UTF-8 nonsense
jonahm-LANL Mar 28, 2024
ff1c609
reset nghost to not break other unit tests
jonahm-LANL Mar 28, 2024
d5aba21
get ascent to behave itself
jonahm-LANL Mar 29, 2024
3f9fb86
Update src/outputs/output_utils.cpp
Yurlungur Apr 1, 2024
62bce90
fix exceptions
jonahm-LANL Apr 1, 2024
5d91dd9
pgrete comments
jonahm-LANL Apr 1, 2024
9c904b6
Merge branch 'develop' into jmm/output-nodes-2
Yurlungur Apr 3, 2024
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