Repositories list

• PlpBenchmarkResults

  Public
  A repository to hold the PLPBenchmarks results.

  R

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• TestGeneratorWorkshop

  Public
  Workshop to use TestGenerator for Unit Testing in epidemiological studies.

  HTML

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• PlpBenchmarks

  Public
  An R package to host RWD benchmark tasks for prediction and assess comparative analyses using the OMOP-CDM.

  benchmarksomop-cdmpatientlevelprediction

  R

  •

  Apache License 2.0

  •0•0•4•0•Updated Jan 16, 2025Jan 16, 2025

• ets-rosetta-stone-ui

  Public
  Simple web interface for the eTransafe Rosetta Stone

  TypeScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• ets-rosetta-stone

  Public
  eTransafe Rosetta Stone is a terminology translation tool

  Java

  •

  Apache License 2.0

  •1•1•0•0•Updated Dec 10, 2024Dec 10, 2024

• omop-poincare

  Public
  Training of hyperbolic embeddings leveraging the OMOP vocabulary hierarchies.

  R

  •1•0•0•1•Updated Dec 3, 2024Dec 3, 2024

• ohdsi_nl_breast_cancer

  Public
  Breast Cancer Study OHDSI NL

  R

  •0•2•0•0•Updated Oct 21, 2024Oct 21, 2024

• Explore

  Public
  Finding a short and accurate decision rule in disjunctive normal form by exhaustive search

  C++

  •1•1•9•0•Updated Oct 21, 2024Oct 21, 2024

• Strategus

  Public
  [Under development] An R packages for coordinating and executing analytics using HADES modules

  R

  •11•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• ExploreExperiments

  Public
  Explore testing with OMOP CDM data and PLP package

  R

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• JCdmBuilder

  Public
  JCdmBuilder is a Java program that can be used to transform observational datasets from their native formats and schemas into the OMOP Common Data Model.

  R

  •8•0•2•0•Updated Oct 17, 2024Oct 17, 2024

• PatientLevelPrediction

  Public
  An R package for performing patient level prediction.

  HTML

  •90•4•0•1•Updated Oct 16, 2024Oct 16, 2024

• KnowledgeGraph

  Public
  Python

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• CohortDiagnostics

  Public
  An R package for performing various cohort diagnostics.

  R

  •50•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• comap

  Public
  The ADVANCE CodeMapper tool

  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •0•3•0•5•Updated Sep 4, 2024Sep 4, 2024

• DelphiDepot

  Public
  A repository containing the prediction models in the DELPHI library

  1•0•0•0•Updated Jul 23, 2024Jul 23, 2024

• aioli

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• medspacy_dutch

  Public
  Dutch resources for extracting concepts and their context using medspacy

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated May 30, 2024May 30, 2024

• Snippet

  Public
  Collection of code snippets to execute patient-level prediction studies.

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated May 24, 2024May 24, 2024

• RareTransferLearning

  Public
  0•0•0•0•Updated May 7, 2024May 7, 2024

• CohortGeneratorModule

  Public
  [Under development] A module wrapper around the CohortGenerator package

  R

  •8•0•0•0•Updated May 1, 2024May 1, 2024

• PatientLevelPredictionModule

  Public
  [Under development] A module wrapper around the PatientLevelPrediction package

  R

  •4•0•0•0•Updated May 1, 2024May 1, 2024

• AssociationRuleMining

  Public
  An R package that implements association rule mining and frequent pattern mining against the OMOP-CDM

  R

  •1•2•2•0•Updated Mar 18, 2024Mar 18, 2024

• DutchClinicalCorpora

  Public
  MIT License

  •0•1•0•0•Updated Mar 14, 2024Mar 14, 2024

• TreatmentPatternsOfChronicCough

  Public
  R

  •

  Apache License 2.0

  •0•0•1•0•Updated Mar 7, 2024Mar 7, 2024

• AsthmaCOPDTreatmentPatterns

  Public
  A package to analyse real-world treatment patterns for patients with asthma, COPD and Asthma-COPD Overlap.

  R

  •0•1•0•0•Updated Feb 22, 2024Feb 22, 2024

• PredictiveValueFPs

  Public
  A study package for evaluating the predictive value of frequent patterns.

  R

  •

  Other

  •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

• faersdbstats

  Public
  Generate safety signal statistics from FDA FAERS data

  Shell

  •

  Apache License 2.0

  •32•0•0•0•Updated Jan 13, 2024Jan 13, 2024

• MedlineDailyUpdateDownload

  Public
  App to incrementally download update files from medline ftp server

  Java

  •0•0•0•0•Updated Jan 5, 2024Jan 5, 2024

• MedlineXmlToDatabase

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 21, 2023Dec 21, 2023