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    10 repositories

    • toil-marginPhase

      Public
      TOIL marginPhase pipeline
      Python
      •
      MIT License
      •1•0•0•1•Updated Nov 18, 2022Nov 18, 2022

    • margin

      Public
      C
      •
      MIT License
      •5•29•6•0•Updated Nov 6, 2022Nov 6, 2022

    • signalAlign

      Public
      HMM-HDP models for MinION signal alignments
      C
      •
      MIT License
      •5•7•1•0•Updated Sep 9, 2022Sep 9, 2022

    • MarginPolish

      Public
      MarginPolish: Graph based assembly polishing
      C
      •
      MIT License
      •16•46•2•0•Updated Nov 24, 2020Nov 24, 2020

    • sonLib

      Public
      Small general purpose library for C and Python with focus on bioinformatics.
      C
      •
      MIT License
      •25•0•0•0•Updated Oct 30, 2020Oct 30, 2020

    • nanopore-toolkit

      Public
      Nanopore toolkit for basic processing of nanopore reads
      C++
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2019Oct 29, 2019

    • NaRLE

      Public
      Nanopore Run Length Encoding: analysis pipeline
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 2, 2019Aug 2, 2019

    • nanopore-RNN

      Public
      Collaboration repository with Nanopore Group
      Python
      •
      MIT License
      •4•0•0•0•Updated May 10, 2018May 10, 2018

    • PyPore

      Public
      Tools used to analyze data from nanopore-based experiments.
      Python
      •
      MIT License
      •8•1•0•0•Updated Feb 10, 2018Feb 10, 2018

    • marginAlign

      Public
      UCSC Nanopore
      Python
      •
      MIT License
      •20•0•0•0•Updated Aug 7, 2017Aug 7, 2017