nanopore-toolkit

Requirements

• gcc >= 5.5
• cmake
• Boost >=1.69.0 (system date_time filesystem iostreams coroutine context)

wget -O boost_1_69_0.tar.gz https://sourceforge.net/projects/boost/files/boost/1.69.0/boost_1_69_0.tar.gz/download
tar xzf boost_1_69_0.tar.gz >/dev/null
cd boost_1_69_0/
./bootstrap.sh --with-libraries=system,date_time,filesystem,iostreams,coroutine,context >/dev/null #--prefix=/usr/
sudo ./b2 && sudo ./b2 install

• hdf5 >= 1.10.4 (Needs to be built with --enable-threadsafe for multithreading)

export CFLAGS="$CFLAGS -fPIC"
export CXXFLAGS="$CXXFLAGS -fPIC"
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.4/src/hdf5-1.10.4.tar.gz
tar -xzf hdf5-1.10.4.tar.gz || exit 255
cd hdf5-1.10.4 && ./configure --prefix /usr/local --enable-threadsafe --disable-hl && make && sudo make install

Installation

python setup.py install
python setup.py test

Manual