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@ProML Probabilistic Machine Learning

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    4 repositories

    • xpore

      Public
      Identification of differential RNA modifications from nanopore direct RNA sequencing
      Python
      •
      MIT License
      •23•0•0•0•Updated Feb 10, 2022Feb 10, 2022

    • PathwayLDA

      Public
      Pathway LDA is a probabilistic model extended from Latent Dirichlet Alllocation, a probabilistic model for extracting topics in text mining, to incorporate the information of pre-defined pathways (factors) while learning pathways that are responsible for the cellular processes.
      R
      •0•0•0•0•Updated Jan 9, 2017Jan 9, 2017

    • MV-warpedMF-SI

      Public
      MV-warpedMF-SI is a multi-view matrix factorisation model that jointly learns a warping function for each data view and efficiently incorporates the side information of the relatedness between rows (e.g. gene similarity) and columns (e.g. disease similarity) during decomposing the data matrices.
      Python
      •0•0•0•0•Updated Jan 9, 2017Jan 9, 2017

    • CorrMF

      Public
      CorrMF is a probabilistic sparse matrix factorisation model that learns dependencies between the latent factors (e.g. pathways) concurrently with extracting active factors from data (e.g. gene expression data).
      MATLAB
      •0•0•0•0•Updated Jan 9, 2017Jan 9, 2017