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CorrMF
CorrMF PublicCorrMF is a probabilistic sparse matrix factorisation model that learns dependencies between the latent factors (e.g. pathways) concurrently with extracting active factors from data (e.g. gene expr…
MATLAB
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PathwayLDA
PathwayLDA PublicPathway LDA is a probabilistic model extended from Latent Dirichlet Alllocation, a probabilistic model for extracting topics in text mining, to incorporate the information of pre-defined pathways (…
R
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MV-warpedMF-SI
MV-warpedMF-SI PublicMV-warpedMF-SI is a multi-view matrix factorisation model that jointly learns a warping function for each data view and efficiently incorporates the side information of the relatedness between rows…
Python
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xpore
xpore PublicForked from GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
Python
Repositories
- xpore Public Forked from GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
- PathwayLDA Public
Pathway LDA is a probabilistic model extended from Latent Dirichlet Alllocation, a probabilistic model for extracting topics in text mining, to incorporate the information of pre-defined pathways (factors) while learning pathways that are responsible for the cellular processes.
- MV-warpedMF-SI Public
MV-warpedMF-SI is a multi-view matrix factorisation model that jointly learns a warping function for each data view and efficiently incorporates the side information of the relatedness between rows (e.g. gene similarity) and columns (e.g. disease similarity) during decomposing the data matrices.
