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Add missing topics
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ShixiangWang committed Jan 22, 2024
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Showing 1 changed file with 17 additions and 1 deletion.
18 changes: 17 additions & 1 deletion _pkgdown.yml
Original file line number Diff line number Diff line change
Expand Up @@ -27,19 +27,25 @@ reference:
- tcga_purity
- tcga_subtypes
- tcga_tmb
- tcga_clinical_fine
- ccle_absolute
- ccle_info
- ccle_info_fine
- toil_info
- pcawg_info
- pcawg_purity
- pcawg_info_fine

- title: Data Query
desc: Functions to query data from UCSC Xena data hubs in single molecular level. The functionality of functions below may overlap, we rank them by importance.
contents:
- .opt_pancan
- query_molecule_value
- query_pancan_value
- get_pancan_value
- query_general_value
- query_tcga_group
- query_toil_value_df
- get_pancan_value
- available_hosts

- title: Analysis and Visualiation for Pan-Cancer Study
Expand All @@ -60,9 +66,12 @@ reference:
- vis_gene_stemness_cor
- vis_gene_tmb_cor
- vis_gene_msi_cor
- vis_gene_pw_cor
- vis_pancan_anatomy
- vis_toil_TvsN
- vis_toil_TvsN_cancer
- vis_toil_Mut
- vis_toil_Mut_cancer
- vis_unicox_tree
- vis_pcawg_dist
- vis_pcawg_gene_cor
Expand All @@ -75,10 +84,17 @@ reference:
- vis_identifier_multi_cor
- vis_identifier_grp_comparison
- vis_identifier_grp_surv
- vis_dim_dist
- vis_identifier_dim_dist
- ezcor
- ezcor_batch
- ezcor_partial_cor

- title: EDA & Report
desc: Functions for exploratory data analysis and report.
contents:
- mol_quick_analysis

- title: Shiny App
desc: Functions related to Xena Shiny App
contents:
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