use github action for pkgdown site

.Rbuildignore

@@ -57,3 +57,4 @@ Dockerfile
 deploy.*
 .dockerignore
 ^CRAN-SUBMISSION$
+^pkgdown$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/pkgdown.yaml

@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -68,3 +68,4 @@ data-raw/CCLE_GNF_data_090613.xls
 inst/extdata/ccle_drug_response_extend.rda
 inst/extdata/pancancer_conserved_immune_subtype.rda
 inst/extdata/toil_sig_score.rda
+docs

DESCRIPTION

@@ -20,7 +20,7 @@ Description: Provides functions and a Shiny application for downloading,
     (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
     databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
 License: GPL (>= 3)
-URL: https://github.com/openbiox/UCSCXenaShiny
+URL: https://github.com/openbiox/UCSCXenaShiny, https://openbiox.github.io/UCSCXenaShiny/
 BugReports: https://github.com/openbiox/UCSCXenaShiny/issues
 Depends: 
     R (>= 3.5)

_pkgdown.yml

@@ -1,12 +1,13 @@
+url: https://openbiox.github.io/UCSCXenaShiny/
 template:
-  package: preferably
-  params:
-    toggle: manual
-destination: docs
+  bootstrap: 5
+  bootswatch: zephyr
 
 authors:
   Shixiang Wang:
     href: https://orcid.org/0000-0001-9855-7357
+  Shensuo Li:
+    href: https://github.com/lishensuo
   Yi Xiong:
     href: https://orcid.org/0000-0002-4370-9824
   Longfei Zhao: