fix(core): project graph creation processes project dependencies correctly

[Coly010]

Current Behavior

The project graph build process incorrectly handles dependencies when workspace projects have
different versions or are referenced via specific version ranges. This causes several issues:

1. NPM lockfile parser crashes when encountering symlinked nested dependencies in workspaces
   (which don't have versions)
2. Package.json dependencies that reference workspace projects with specific versions (e.g.,
   "proj4": "1.0.0" when workspace has "version": "2.0.0") incorrectly resolve to the workspace
   project instead of the installed npm package
3. Version ranges and file references to workspace projects are not properly validated

Expected Behavior

The dependency resolution should:

• Handle symlinked workspace packages in npm lockfiles without crashing
• Correctly differentiate between workspace projects and npm packages when specific versions are
  referenced
• Properly validate version ranges against workspace package versions using semver
• Support file references (e.g., "file:../proj6") for workspace dependencies
• Only resolve to workspace projects when the version constraint is satisfied or when using
  wildcards

Notes

This has inadvertently caused issues when calculating which manifest files need to be updated in the JSVersionActions / Nx Release for Npm Packages

Related Issues

Fixes #31454

[vercel]

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Project	Deployment	Preview	Updated (UTC)
nx-dev	Ready	Preview	Sep 26, 2025 10:52am

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☁️ Nx Cloud last updated this comment at 2025-09-26 18:10:56 UTC

[github-actions]

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