Mark FASTQC outputs with suffixes

nf-core · Jul 2, 2024 · ffbc410 · ffbc410
1 parent 92a0a45
commit ffbc410
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/subworkflows/nf-core/fastq_fastqc_umitools_fastp/nextflow.config b/subworkflows/nf-core/fastq_fastqc_umitools_fastp/nextflow.config
diff --git a/subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/nextflow.config b/subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/nextflow.config
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -50,15 +50,15 @@ module_order:
       anchor: "fastqc_raw"
       info: "This section of the report shows FastQC results before adapter trimming."
       path_filters:
-        - "**/raw/*.zip"
+        - "*_raw_fastqc.zip"
   - cutadapt
   - fastp
   - fastqc:
       name: "FastQC (trimmed)"
       anchor: "fastqc_trimmed"
       info: "This section of the report shows FastQC results after adapter trimming."
       path_filters:
-        - "**/trim/*.zip"
+        - "*_trimmed_fastqc.zip"
 
 # Don't show % Dups in the General Stats table (we have this from Picard)
 table_columns_visible: