The output channel of fastq_fastqc_umitools_trimgalore/fastp is called 'umi_log' and not 'log'. The meta.yml is wrong.

Author: MatthiasZepper

workflows/rnaseq/main.nf

@@ -164,7 +164,7 @@ workflow RNASEQ {
         ch_filtered_reads  = FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.reads
         ch_trim_read_count = FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.trim_read_count
         ch_multiqc_files = ch_multiqc_files.mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.fastqc_zip.collect{it[1]}) // FastQC report - untrimmed
-        ch_multiqc_files = ch_multiqc_files.mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.log.collect{it[1]}) // umi-tools extract logs
+        ch_multiqc_files = ch_multiqc_files.mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.umi_log.collect{it[1]}) // umi-tools extract logs
         ch_multiqc_files = ch_multiqc_files.mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.trim_zip.collect{it[1]})  // FastQC report - trimmed
         ch_multiqc_files = ch_multiqc_files.mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.trim_log.collect{it[1]}) // Trim Galore! trimming report
         ch_versions = ch_versions.mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.versions)