remove quay but leave the docker.io repo

nf-core · Oct 17, 2024 · 1d63040 · 1d63040
1 parent 6773f5b
commit 1d63040
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Showing 8 changed files with 8 additions and 8 deletions.
diff --git a/modules/local/fusioncatcher/detect/main.nf b/modules/local/fusioncatcher/detect/main.nf
@@ -3,7 +3,7 @@ process FUSIONCATCHER {
     label 'process_high'
 
     conda "bioconda::fusioncatcher=1.33"
-    container "nf-core/fusioncatcher:1.33"
+    container "docker.io/clinicalgenomics/fusioncatcher:1.33"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/fusioncatcher/download/main.nf b/modules/local/fusioncatcher/download/main.nf
@@ -3,7 +3,7 @@ process FUSIONCATCHER_DOWNLOAD {
     label 'process_medium'
 
     conda "bioconda::fusioncatcher=1.33"
-    container "nf-core/fusioncatcher:1.33"
+    container "docker.io/clinicalgenomics/fusioncatcher:1.33"
 
     output:
     path "*"                , emit: reference

diff --git a/modules/local/fusioninspector/main.nf b/modules/local/fusioninspector/main.nf
@@ -3,7 +3,7 @@ process FUSIONINSPECTOR {
     label 'process_high'
 
     conda "bioconda::dfam=3.7 bioconda::hmmer=3.4 bioconda::star-fusion=1.13.0 bioconda::trinity=2.15.1 bioconda::samtools=1.19.2 bioconda::star=2.7.11b"
-    container "nf-core/starfusion:1.13.0"
+    container 'docker.io/trinityctat/starfusion:1.13.0'
 
     input:
     tuple val(meta), path(reads), path(fusion_list)

diff --git a/modules/local/fusionreport/detect/main.nf b/modules/local/fusionreport/detect/main.nf
@@ -3,7 +3,7 @@ process FUSIONREPORT {
     label 'process_medium'
 
     conda "bioconda::star=2.7.9a"
-    container "nf-core/fusion-report:2.1.8"
+    container "docker.io/clinicalgenomics/fusion-report:2.1.8"
 
 
     input:

diff --git a/modules/local/fusionreport/download/main.nf b/modules/local/fusionreport/download/main.nf
@@ -3,7 +3,7 @@ process FUSIONREPORT_DOWNLOAD {
     label 'process_medium'
 
     conda "bioconda::star=2.7.9a"
-    container "nf-core/fusion-report:2.1.8"
+    container "docker.io/clinicalgenomics/fusion-report:2.1.8"
 
     input:
     val(username)

diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf
@@ -2,7 +2,7 @@ process STARFUSION_BUILD {
     tag 'star-fusion'
 
     conda "bioconda::dfam=3.7 bioconda::hmmer=3.4 bioconda::star-fusion=1.13.0 bioconda::trinity=2.15.1 bioconda::samtools=1.19.2 bioconda::star=2.7.11b"
-    container "nf-core/starfusion:1.13.0"
+    container "docker.io/trinityctat/starfusion:1.13.0"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/starfusion/detect/main.nf b/modules/local/starfusion/detect/main.nf
@@ -3,7 +3,7 @@ process STARFUSION {
     label 'process_high'
 
     conda "bioconda::dfam=3.7 bioconda::hmmer=3.4 bioconda::star-fusion=1.13.0 bioconda::trinity=2.15.1 bioconda::samtools=1.19.2 bioconda::star=2.7.11b"
-    container "nf-core/starfusion:1.13.0"
+    container 'docker.io/trinityctat/starfusion:1.13.0'
 
     input:
     tuple val(meta), path(reads), path(junction)

diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf
@@ -2,7 +2,7 @@ process STARFUSION_DOWNLOAD {
     tag 'star-fusion'
 
     conda "bioconda::dfam=3.7 bioconda::hmmer=3.4 bioconda::star-fusion=1.13.0 bioconda::trinity=2.15.1 bioconda::samtools=1.19.2 bioconda::star=2.7.11b"
-    container "nf-core/starfusion:1.13.0"
+    container 'docker.io/trinityctat/starfusion:1.13.0'
 
     output:
     path "ctat_genome_lib_build_dir/*"            , emit: reference