Skip to content
Open
Show file tree
Hide file tree
Changes from 1 commit
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
27 changes: 27 additions & 0 deletions modules/nf-core/vuegen/README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,27 @@
# VueGen module

## Images using wave

Cached images for 0.5.1 version available on wave, see
[docs](https://docs.seqera.io/wave#seqera-containers---the-community-container-registry)

platform | version | image
-------- | ------- | -----
docker | linux/amd64 | community.wave.seqera.io/library/vuegen_python:236414fc5cfce774
singularity | linux/amd64 | oras://community.wave.seqera.io/library/vuegen_python:1adb57ecbfa02088
docker | linux/arm64 | community.wave.seqera.io/library/vuegen_python:a1dc6490f5045706
singularity | linux/arm64 | oras://community.wave.seqera.io/library/vuegen_python:64670fcadedf151f

## Custom docker file

- check Docker best practices with hadolint, see
[docker-docs](https://docs.docker.com/build/building/best-practices/)


```bash
$ hadolint Dockerfile
Dockerfile:7 DL3008 warning: Pin versions in apt get install. Instead of `apt-get install <package>` use `apt-get install <package>=<version>`
Dockerfile:24 DL3059 info: Multiple consecutive `RUN` instructions. Consider consolidation.
Dockerfile:31 SC2211 warning: This is a glob used as a command name. Was it supposed to be in ${..}, array, or is it missing quoting?
Dockerfile:31 DL4006 warning: Set the SHELL option -o pipefail before RUN with a pipe in it. If you are using /bin/sh in an alpine image or if your shell is symlinked to busybox then consider explicitly setting your SHELL to /bin/ash, or disable this check
```
4 changes: 3 additions & 1 deletion modules/nf-core/vuegen/main.nf
Original file line number Diff line number Diff line change
@@ -1,7 +1,9 @@
process VUEGEN {
label 'process_single'
conda "${moduleDir}/environment.yml"
container "dtu_biosustain_dsp/vuegen:v0.5.1-nextflow"
container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
? 'oras://community.wave.seqera.io/library/vuegen_python:1adb57ecbfa02088'
: 'community.wave.seqera.io/library/vuegen_python:236414fc5cfce774'}"

input:
val input_type
Expand Down
Loading