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Issues: nf-core/modules

Caused by: java.nio.channels.OverlappingFileLockException
#6664 by edmundmiller was closed Nov 18, 2024
Closed 13
Batch module updates - Fall 2024
#5828 opened Jun 18, 2024 by edmundmiller
Open 15
Renovate Dashboard 🤖
#4211 opened Oct 24, 2023 by renovate bot
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461 Open 1,368 Closed
461 Open 1,368 Closed
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Issues list

Update GREA
#7195 opened Dec 11, 2024 by suzannejin
@suzannejin
new module: AGAT/SPFILTERBYORFSIZE new module Adding a new module
#7187 opened Dec 10, 2024 by GallVp
4 tasks done
@GallVp
new module: WIPERTOOLS new module Adding a new module
#7184 opened Dec 9, 2024 by mazzalab
4 tasks done
1
bbmap/bbduk sometimes fails to create the versions.yml file bug Something isn't working
#7183 opened Dec 9, 2024 by mantisps
2 tasks done
cellranger multi with gene expression and CRISPR data fails to process CRISPR data bug Something isn't working
#7174 opened Dec 6, 2024 by svigneau
2 tasks done
1
new module: Portcullis
#7172 opened Dec 6, 2024 by blancoheredia
3 of 4 tasks
new module: PALOM new module Adding a new module
#7165 opened Dec 5, 2024 by kbestak
4 tasks done
@kbestak
Having multiple tools with version breaks pipeline (muse/sump) bug Something isn't working
#7164 opened Dec 5, 2024 by famosab
2 tasks done
spotiflow not tagged as an "image" module bug Something isn't working
#7159 opened Dec 4, 2024 by tischi
2 tasks done
new module: CAREamics new module Adding a new module
#7157 opened Dec 4, 2024 by diyasrivas
4 tasks done
@melisande-c @diyasrivas
1
new module: INSTANSEG new module Adding a new module
#7152 opened Dec 4, 2024 by migueLib
4 tasks done
@migueLib
What is the meaning "seed" value in module STITCH?
#7150 opened Dec 4, 2024 by thanhtruc66
CI: nf-test shard jobs to have test/tag names
#7128 opened Nov 30, 2024 by sateeshperi
1
new module: MDUST new module Adding a new module
#7076 opened Nov 25, 2024 by GallVp
4 tasks done
@GallVp
new module: CTAT/SPLICING new module Adding a new module
#7057 opened Nov 22, 2024 by matthdsm
4 tasks done
@matthdsm @ToonRosseel @nvnieuwk
1
[FEATURE] move nf-test tests from gatk4/asereadcounter in a tests folder
#7046 opened Nov 21, 2024 by maxulysse
Remove params.hisat2_build_memory from hisat2/build
#7045 opened Nov 21, 2024 by maxulysse
Address limitations of using nf-test sharding
#7018 opened Nov 18, 2024 by edmundmiller
1
Create conda-fail.yml on Conda CI failures
#7017 opened Nov 18, 2024 by edmundmiller
Handle GitHub runners possibly running out of space
#7016 opened Nov 18, 2024 by edmundmiller
2
update module: Dragonflye to v1.2.1 update module
#7015 opened Nov 18, 2024 by Daniel-VM
3 of 4 tasks
Update quartonotebook to use wave when conda support comes
#7006 opened Nov 16, 2024 by edmundmiller
new subworkflow: fastq_align_pileup_biscuit new subworkflow
#6974 opened Nov 12, 2024 by sateeshperi
4 tasks done
@sateeshperi
new module: NANOQC new module Adding a new module
#6968 opened Nov 11, 2024 by lfreitasl
4 tasks done
1
@lfreitasl
new module: AGAT/SPFLAGSHORTINTRONS new module Adding a new module
#6963 opened Nov 9, 2024 by GallVp
4 tasks done
@GallVp
ProTip! no:milestone will show everything without a milestone.