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@JulianFlesch JulianFlesch commented Sep 2, 2025

PR for testing the updated devcontainer setup in tools nf-core/tools#3569.

Changes to using the new devcontainer images ready for use with Github codespaces.

Closes #8769.

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@JulianFlesch JulianFlesch changed the title DRAFT: Feature/new devcontainers Adds new Devcontainer Setup for use with Codespaces Sep 11, 2025
@JulianFlesch JulianFlesch marked this pull request as ready for review September 11, 2025 08:21
@JulianFlesch JulianFlesch requested review from a team as code owners September 11, 2025 08:21
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User id mismatch when using vscode and devcontainer on Windows 11 with WSL2

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