liftover config edit

ncherric · Aug 25, 2023 · 6548347 · 6548347
1 parent 1d53fde
commit 6548347
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/rules/liftoverTo37.smk b/workflow/rules/liftoverTo37.smk
@@ -63,7 +63,7 @@ rule final_liftover:
     output:
         liftedVCF="data/liftover/{version}/liftedOver.{name}.vcf",
     params:
-        refAssemblyVersion=config['Liftover']['desiredVersion'],
+        refAssemblyVersion=config['LiftoverSub']['desiredVersion'],
     shell:
         """
         mkdir -p data/liftover/{params.refAssemblyVersion}

diff --git a/workflow/rules/liftoverTo38.smk b/workflow/rules/liftoverTo38.smk
@@ -84,7 +84,7 @@ rule final_liftover:
     output:
         liftedVCF="data/liftover/{version}/liftedOver.{name}.vcf",
     params:
-        refAssemblyVersion=config['Liftover']['desiredVersion'],
+        refAssemblyVersion=config['LiftoverSub']['desiredVersion'],
     shell:
         """
         mkdir -p data/liftover/{params.refAssemblyVersion}