liftover config edit

ncherric · Aug 25, 2023 · 1d53fde · 1d53fde
1 parent b4d0edb
commit 1d53fde
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/rules/liftoverTo37.smk b/workflow/rules/liftoverTo37.smk
@@ -1,4 +1,4 @@
-NAMES=config['Liftover']['filename']
+NAMES=config['LiftoverSub']['filename']
 
 # remove chr string 
 # awk '{ gsub(/chr/,"", $1); print }' OFS="\t" /homer/herrick/EUR-face-ancestry/2022/2-reference-IDs/data/13-Last-overlap-EUR1kgenhgdp.vcf > /homer/herrick/EUR-face-ancestry/2022/2-reference-IDs/data/15-Last-overlap-EUR1kgenhgdp-noChrString.vcf

diff --git a/workflow/rules/liftoverTo38.smk b/workflow/rules/liftoverTo38.smk
@@ -1,4 +1,4 @@
-NAMES=config['Liftover']['filename']
+NAMES=config['LiftoverSub']['filename']
 
 # remove chr string 
 # awk '{ gsub(/chr/,"", $1); print }' OFS="\t" /homer/herrick/EUR-face-ancestry/2022/2-reference-IDs/data/13-Last-overlap-EUR1kgenhgdp.vcf > /homer/herrick/EUR-face-ancestry/2022/2-reference-IDs/data/15-Last-overlap-EUR1kgenhgdp-noChrString.vcf