Fix #499, #496, and #478, Updated cFE App Developer's Guide #545
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Describe the contribution
Updated the cFE app developer's guide markdown with changes to resolve issues 499, 496, and 478. Made a variety of other small content updates and reordered some sections.
Fixes #499, fixes #496, fixes #478
Testing performed
None - documentation only
Expected behavior changes
None - documentation only
System(s) tested on
None - documentation only
Additional context
N/A
Third party code
N/A
Contributor Info - All information REQUIRED for consideration of pull request
Elizabeth Timmons - NASA/GSFC