Skip to content
Merged
Show file tree
Hide file tree
Changes from 6 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@
- Add `similarity_measure` slot to the `MappingSet` class ([issue](https://github.com/mapping-commons/sssom/issues/411)).
- Add `sssom_version` slot to the `MappingSet` class ([issue](https://github.com/mapping-commons/sssom/issues/439)).
- Change the type of the `see_also` slot to `xsd:anyURI` ([issue](https://github.com/mapping-commons/sssom/issues/422)).
- Add `mappings_set_confidence` slot to the `MappingSet` class ([issue](https://github.com/mapping-commons/sssom/issues/438)).
- TBD
- Add `mapping_set_confidence` slot to the `MappingSet` class ([issue](https://github.com/mapping-commons/sssom/issues/438)).
- Add `mapping_tool_id` slot to the `Mapping` and `MappingSet` classes ([issue](https://github.com/mapping-commons/sssom/issues/449)).

## SSSOM version 1.0.0

Expand Down
15 changes: 15 additions & 0 deletions examples/schema/mapping_tool_id.sssom.tsv
Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
#curie_map:
# HP: http://purl.obolibrary.org/obo/HP_
# MP: http://purl.obolibrary.org/obo/MP_
# orcid: https://orcid.org/
# wikidata: https://www.wikidata.org/wiki/
#mapping_set_id: https://w3id.org/sssom/commons/examples/mapping_tool_id.sssom.tsv
#license: "https://creativecommons.org/publicdomain/zero/1.0/"
#creator_id:
# - orcid:0000-0002-7356-1779
#mapping_provider: "https://w3id.org/sssom/core_team"
#issue_tracker: "https://github.com/mapping-commons/mh_mapping_initiative/issues"
#comment: This is an example file for the SSSOM for illustration only. Its contents are entirely fabricated.
subject_id predicate_id object_id mapping_justification mapping_tool_id
HP:0009124 skos:exactMatch MP:0000003 semapv:ManualMappingCuration wikidata:Q58057366
HP:0008551 skos:exactMatch MP:0000018 semapv:ManualMappingCuration wikidata:Q58057366
19 changes: 19 additions & 0 deletions src/sssom_schema/schema/sssom_schema.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -548,6 +548,7 @@ slots:
mapping_tool:
description: A reference to the tool or algorithm that was used to generate the
mapping. Should be a URL pointing to more info about it, but can be free text.
Consider using the mapping_tool_id slot for a more standardised reference.
range: string
instantiates: sssom:Propagatable
annotations:
Expand All @@ -557,6 +558,22 @@ slots:
description: A URL pointing to the AgreementMakerLight project.
- value: AgreementMakerLight
description: A string (name) denoting the AgreementMakerLight project.
mapping_tool_id:
description: The ID (entity reference) of the tool or algorithm that was used to generate the
mapping.
range: EntityReference
instantiates:
- sssom:Propagatable
- sssom:Versionable
annotations:
propagated: true
added_in: "1.1"
examples:
- value: wikidata:Q58057366
description: A wikidata PURL identifying the AgreementMakerLight project.
see_also:
- https://github.com/mapping-commons/sssom/blob/master/examples/schema/mapping_tool_id.sssom.tsv
- https://github.com/mapping-commons/sssom/issues/449
mapping_tool_version:
description: Version string that denotes the version of the mapping tool used.
range: string
Expand Down Expand Up @@ -807,6 +824,7 @@ classes:
- predicate_type
- mapping_provider
- mapping_tool
- mapping_tool_id
- mapping_tool_version
- mapping_date
- publication_date
Expand Down Expand Up @@ -851,6 +869,7 @@ classes:
- mapping_source
- mapping_cardinality
- mapping_tool
- mapping_tool_id
- mapping_tool_version
- mapping_date
- publication_date
Expand Down