feat: add --inactive option to outdated and upgrade commands for inactive tools

[roele]

Adds a new --inactive flag to outdated and upgrade command to allow to show/upgrade tools which are currently not active or defined in a configuration.

[gemini-code-assist]

Code Review

This pull request introduces a --no-source flag to the outdated and upgrade commands, allowing users to manage installed tools even if they are not currently active in the configuration. The changes include updates to the CLI arguments, the toolset resolution logic, and the addition of end-to-end tests. Feedback suggests refactoring a redundant match block in outdated_info.rs using the ba() method for better readability and improving error handling in mod.rs by logging warnings instead of silently defaulting on version discovery failures.

[greptile-apps]

Greptile Summary

Adds a --inactive flag to mise outdated and mise upgrade that surfaces installed-but-unconfigured tools alongside the normal active-tool output. The implementation chains list_all_versions (current + disk-installed) in list_outdated_versions_filtered when the flag is set, uses the backend's absolute latest for inactive (ToolSource::Unknown) entries, and rewrites the tool request to point to that latest before upgrade.

• upgrade.rs correctly threads filter_tools into list_outdated_versions_filtered, so mise upgrade tool --inactive scopes to just that tool.
• outdated.rs still calls the zero-argument list_outdated_versions (which forwards filter_tools = None), so the previously-reported issue where mise outdated tool --inactive ignores the tool-name filter remains unaddressed.
• Two inline comments in outdated_info.rs reference the old working name --no-source instead of --inactive.

Confidence Score: 4/5

The upgrade path is correct, but the outdated command still drops the tool-name filter for inactive entries, a gap carried over from earlier review rounds.

The upgrade --inactive path correctly passes filter_tools so tool-name arguments are respected. However, outdated --inactive still calls list_outdated_versions with filter_tools = None, meaning mise outdated node --inactive reports every inactive tool on disk rather than just node. This unresolved issue in outdated.rs keeps the score from being higher.

src/cli/outdated.rs — the tool-name filter is not forwarded when --inactive is set.

Important Files Changed

Filename	Overview
src/cli/outdated.rs	Adds --inactive flag; passes it through ResolveOptions but calls list_outdated_versions (which forwards filter_tools=None), so per-tool filtering of inactive entries is silently dropped — already tracked in prior review threads.
src/cli/upgrade.rs	Adds --inactive flag and correctly passes filter_tools slice to list_outdated_versions_filtered; tool-level filtering works for inactive entries. ResolveOptions threaded through to both the list and install stages.
src/toolset/mod.rs	Branches on opts.inactive to call list_all_versions (current + installed) instead of list_current_versions; filter_tools/exclude_tools are applied uniformly to both active and inactive entries.
src/toolset/outdated_info.rs	Uses use_backend_latest for inactive tools and rewrites tool_request to point to latest; two new comments still say --no-source instead of --inactive.
src/toolset/tool_version.rs	Adds inactive field to ResolveOptions struct with default false; threaded correctly through ToolVersion::resolve and the Default impl.
e2e/cli/test_outdated	New test block correctly removes global config, verifies tiny disappears from normal mise outdated, then reappears with --inactive.
e2e/cli/test_upgrade	New test installs tiny, removes it from config, then verifies mise upgrade tiny --inactive upgrades it to the latest version.

_{Reviews (9): Last reviewed commit: "[autofix.ci] apply automated fixes" | Re-trigger Greptile}

[Copilot]

Pull request overview

Adds a --no-source flag to mise outdated and mise upgrade so they can include/operate on tools that are installed but no longer have a config source (i.e., inactive/not present in the current config), and updates generated/help documentation and completion metadata accordingly.

Changes:

• Add --no-source flag wiring for outdated and upgrade, plus completion/usage/man/doc updates.
• Extend outdated/upgrade internals to include installed-but-inactive tool versions and resolve “latest” appropriately for ToolSource::Unknown.
• Add e2e coverage for showing/upgrading an installed tool after removing it from config.

Reviewed changes

Copilot reviewed 15 out of 15 changed files in this pull request and generated 5 comments.

Show a summary per file

File	Description
xtasks/fig/src/mise.ts	Adds --no-source to Fig completion specs for outdated and upgrade.
src/toolset/tool_version.rs	Extends ResolveOptions with no_source and threads it through latest-version lookup options.
src/toolset/outdated_info.rs	Adjusts latest-version resolution and upgrade request construction for installed-but-inactive tools under --no-source.
src/toolset/mod.rs	Switches outdated listing to include installed versions when no_source is set.
src/cli/use.rs	Updates ResolveOptions initialization to include the new no_source field; minor help formatting tweak.
src/cli/upgrade.rs	Adds --no-source flag and passes it into resolution/install options.
src/cli/outdated.rs	Adds --no-source flag and passes it into outdated listing options.
src/cli/install.rs	Updates ResolveOptions initialization to include the new no_source field.
mise.usage.kdl	Adds --no-source to usage spec for outdated and upgrade (feeds generated docs/man).
man/man1/mise.1	Documents --no-source in the man page for outdated and upgrade.
e2e/cli/test_upgrade	Adds e2e test ensuring mise upgrade <tool> --no-source upgrades an installed-but-inactive tool.
e2e/cli/test_outdated	Adds e2e test ensuring mise outdated --no-source shows an installed-but-inactive tool.
docs/cli/use.md	Minor markdown formatting adjustment in examples section.
docs/cli/upgrade.md	Documents --no-source in generated CLI docs for upgrade.
docs/cli/outdated.md	Documents --no-source in generated CLI docs for outdated.

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