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Merged
merged 6 commits into from
Nov 7, 2025
Merged

MFEM Parsed function of non-linear variable #31134

merged 6 commits into from
Nov 7, 2025

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@karthichockalingam
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@karthichockalingam karthichockalingam commented Jul 28, 2025

Hi,

Currently, MFEM/MOOSE supports the parsing function of space and time, and creates scalar coefficient. The PR supports the parsing of functions for MFEM variables and creates a scalar coefficient. However, the support for the MFEM non-linear system is still in progress. Thus, in its current form, it can couple with auxiliary variables.

Thanks!
@alexanderianblair
@SohailSTFC
Karthik.

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karthichockalingam commented Jul 29, 2025

PR closes #31145

@karthichockalingam karthichockalingam force-pushed the ab_sr_kc/parsed-function branch from 136e36a to f2f353c Compare July 29, 2025 15:23
@karthichockalingam karthichockalingam force-pushed the ab_sr_kc/parsed-function branch 2 times, most recently from 7cb5ea0 to d7518d8 Compare July 31, 2025 09:45
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moosebuild commented Jul 31, 2025 •
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Job Documentation, step Docs: sync website on 9a927c6 wanted to post the following:

View the site here

This comment will be updated on new commits.

@karthichockalingam karthichockalingam force-pushed the ab_sr_kc/parsed-function branch 9 times, most recently from 84c50fc to 56350d0 Compare August 6, 2025 00:33
nmnobre
nmnobre requested changes Aug 13, 2025
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First review pass done. Thanks for the hard work guys. :)

@nmnobre nmnobre self-assigned this Aug 13, 2025
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@lindsayad lindsayad removed their assignment Aug 21, 2025
@karthichockalingam karthichockalingam force-pushed the ab_sr_kc/parsed-function branch 2 times, most recently from 4259be3 to 03cfa35 Compare August 27, 2025 15:53
nmnobre
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nmnobre commented Aug 27, 2025

We'll also need to revert 88fefcf and rebase. Let's squash a bit as well please.

@karthichockalingam karthichockalingam marked this pull request as ready for review August 28, 2025 08:16
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moosebuild commented Aug 29, 2025 •
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Job Coverage, step Generate coverage on 9a927c6 wanted to post the following:

Framework coverage

7323e9 #31134 9a927c
Total Total +/- New
Rate 86.02% 86.02% +0.00% 100.00%
Hits 124629 124662 +33 34
Misses 20254 20255 +1 0

Diff coverage report

Full coverage report

Modules coverage

Coverage did not change

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This comment will be updated on new commits.

@nmnobre nmnobre force-pushed the ab_sr_kc/parsed-function branch 2 times, most recently from 6ee0074 to 0b8e4af Compare October 31, 2025 15:16
@nmnobre nmnobre mentioned this pull request Nov 2, 2025
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@nmnobre nmnobre force-pushed the ab_sr_kc/parsed-function branch 15 times, most recently from f1bcf82 to 12af592 Compare November 6, 2025 12:08
karthichockalingam and others added 6 commits November 6, 2025 13:02
@karthichockalingam @SohailSTFC @nmnobre
Add parsed function and coefficient classes for MFEM problems (idahol…
ac71d05 
…ab#31134)

Co-authored-by: Sohail Rathore <[email protected]>
Co-authored-by: Nuno Nobre <[email protected]>
@karthichockalingam @SohailSTFC @nmnobre
Add documentation for parsed function functionality (idaholab#31134)
48d066e 
Co-authored-by: Sohail Rathore <[email protected]>
Co-authored-by: Nuno Nobre <[email protected]>
@karthichockalingam @SohailSTFC @nmnobre
Add test for parsed function functionality (idaholab#31134)
10dec02 
Co-authored-by: Sohail Rathore <[email protected]>
Co-authored-by: Nuno Nobre <[email protected]>
@nmnobre
Reframe MFEMParsedFunction as a Function not a UserObject (idaholab#3…
b1d4cd5 
…1134)

Plus allocate array of coefficient and vector of position values just once
@nmnobre
Improve documentation for parsed function functionality (idaholab#31134)
3be1edc
@nmnobre
Reduce parsed function test footprint w/ manufactured solution (idaho…
9a927c6 
…lab#31134)
@nmnobre nmnobre force-pushed the ab_sr_kc/parsed-function branch from 12af592 to 9a927c6 Compare November 6, 2025 13:03
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moosebuild commented Nov 6, 2025

Job Test, step Results summary on 9a927c6 wanted to post the following:

Framework test summary

Compared against 7323e92 in job civet.inl.gov/job/3361666.

Removed tests

Added tests

Test Time (s)
mfem/functions.MFEMParsedFunction 2.20

Run time changes

Test Base (s) Head (s) +/-
geomsearch/patch_update_strategy.nonlinear_iter 3.09 5.65 +82.63%
outputs/format.definition_boolean_type_valenum_choices_test 17.90 31.10 +73.75%
outputs/format.definition_default_type_test 17.64 30.21 +71.28%
outputs/format.hit_search 14.48 24.80 +71.23%
bcs/ad_penalty_dirichlet_bc.ad/function_penalty_dirichlet_bc_test-jac 2.50 4.27 +70.68%
outputs/format.definition_mesh_file_parameter_requirement_removal_test 18.19 30.85 +69.63%
outputs/format.definition_childatleastone_test 18.30 31.04 +69.58%
outputs/format.hit 22.96 38.65 +68.34%
geomsearch/patch_update_strategy.always 2.94 4.92 +67.27%
outputs/format.json_full 17.27 28.70 +66.22%
outputs/format.definition_active_parameter_test 18.34 30.46 +66.08%
outputs/format.definition_input_choices_test 18.44 30.39 +64.81%
multiapps/secant_postprocessor.pp_transient/iteration_adaptive 3.45 5.66 +64.15%
outputs/format.definition_normal_sub_test 18.75 30.75 +64.05%
outputs/format.no_double_executioner_output 14.51 23.79 +63.92%
outputs/format.definition_type_sub_test 18.25 29.84 +63.50%
outputs/format.definition_default_subblock_types_child_parameter_promotion_test 18.42 30.06 +63.19%
outputs/format.definition_valenum_test 18.70 30.51 +63.10%
outputs/format.definition_default_types_child_parameter_promotion_test 18.62 30.32 +62.82%
kernels/array_coupled_time_derivative.jac_3d 2.44 3.96 +62.27%
outputs/format.yaml_dump_test 14.70 23.83 +62.10%
indicators/analytical_indicator.analytical_fv 2.23 3.60 +61.28%
multiapps/steffensen.variables_transient/app_end_transfers_end 2.88 4.62 +60.57%
outputs/format.definition_scraping_markers 18.75 30.06 +60.33%
outputs/debug.show_execution_order/dgkernels 2.79 4.47 +60.18%
kernels/ad_flux_divergence.transient 2.27 3.63 +59.89%
misc/signal_handler.test_signal_parallel_recover_exodiff 3.07 4.89 +59.35%
adaptivity/displaced_mesh.linear_lagrange_source 2.11 3.36 +59.05%
multiapps/picard.test 6.16 9.79 +58.87%
outputs/format.definition_minvalinc_inputdefault_test 18.54 29.41 +58.61%
multiapps/secant.variables_transient/app_begin_transfers_begin_secant_sub 3.85 6.09 +58.47%
time_integrators/dirk.dirk4_fdp 3.29 5.20 +58.40%
auxkernels/parsed_aux.xyzt 2.12 3.36 +58.38%
multiapps/picard_postprocessor.pp_transient/app_begin_transfers_begin_picard_sub 3.36 5.31 +57.83%
outputs/debug.show_execution_order/dirac 2.93 4.62 +57.68%
time_integrators/convergence.implicit_astabledirk4/level1 4.15 6.53 +57.59%
multiapps/steffensen.variables_transient/sub_cycling 3.07 4.83 +57.54%
convergence/postprocessor_convergence.multiapp_fp 4.40 6.94 +57.50%
geomsearch/3d_moving_penetration_smoothing.disjoint/pl_test3qns 2.65 4.17 +57.47%
materials/derivative_material_interface.ad_bad_evaluation/nan 2.14 3.37 +57.39%
multiapps/cliargs_from_file.multiline_file 2.32 3.65 +57.07%
neml2/torchscript.heat_conduction 2.11 3.31 +56.79%
multiapps/secant.variables_steady/steady_with_pseudo_transient_sub 2.23 3.49 +56.57%
materials/derivative_material_interface.ad_analytic_derivatives/material_chaining 22.39 35.03 +56.44%
executioners/nl_forced_its.nl_forced_its 2.26 3.52 +56.02%
kernels/ad_mat_diffusion.1D/ad_1D_transient_jacobian 2.80 4.36 +55.78%
hdgkernels/ldg-diffusion.mms/quad 14.10 21.92 +55.51%
multiapps/secant.variables_transient/test_rerun 4.04 6.28 +55.49%
transfers/multiapp_userobject_transfer.transfer/from_sub 2.34 3.63 +55.35%
time_integrators/convergence.implicit_astabledirk4/level2 6.99 10.86 +55.34%
multiapps/picard_postprocessor.pp_transient/sub_cycling 5.65 8.76 +55.15%
time_steppers/fixed_point_iteration_adaptive_dt.decrease_dt 2.23 3.46 +55.04%
multiapps/secant_postprocessor.pp_transient/app_begin_transfers_end_secant_sub 6.87 10.65 +54.91%
multiapps/steffensen.variables_transient/app_begin_transfers_begin_steffensen_sub 3.46 5.36 +54.82%
postprocessors/side_integral.functors/error_no_face_info 2.66 4.12 +54.74%
outputs/format.json_no_template 18.03 27.86 +54.57%
reporters/parsed_reporters.vectorMath 2.78 4.30 +54.45%
meshmodifiers/element_subdomain_modifier.amr_nbc 2.18 3.36 +54.39%
functions/parsed.transient 2.29 3.53 +54.29%
misc/signal_handler.test_signal 3.15 4.86 +53.98%
mfem/kernels.MFEMIrrotational 9.69 14.91 +53.93%
meshgenerators/cut_mesh_by_level_set_generator.test/with_xyzd 4.15 6.39 +53.92%
multiapps/picard_postprocessor.pp_transient/iteration_adaptive 6.38 9.81 +53.73%
fvkernels/dispersion-test.top_right_limited_scalar_advection/vanLeer 2.16 3.31 +53.42%
linearfvbcs/robin.advection-1d-robin 5.64 8.64 +53.17%
transfers/multiapp_postprocessor_interpolation_transfer.basis/from_sub_to_parent_single_sub_file 3.52 5.39 +53.15%
fvkernels/mms/skewness-correction/diffusion.skewcorrected 7.18 10.99 +53.15%
functormaterials/functor_change.test/nonlinear 2.59 3.96 +52.84%
meshgenerators/distributed_rectilinear/dmg_displaced_mesh.pbc/adaptivity_autoscaling 3.74 5.72 +52.71%
controls/web_server_control.errors/set_realeigenmatrix_bad_convert2 2.03 3.09 +52.64%
dirackernels/point_caching.point_caching/moving_mesh 2.56 3.91 +52.58%
transfers/multiapp_userobject_transfer.transfer/from_sub_nearest_sub_app 2.49 3.79 +52.57%
time_integrators/convergence.implicit_lstabledirk3/level2 6.14 9.36 +52.51%
kernels/2d_diffusion.matdiffusion/ad 4.03 6.14 +52.30%
postprocessors/element_variable_value.elem_var_value_fv_test 2.31 3.52 +52.25%
time_integrators/convergence.implicit_midpoint/level1 3.38 5.14 +52.21%
functors/scalar_variable.test 2.50 3.79 +52.06%
kernels/ad_mat_diffusion.1D/ad_1D_transient 2.37 3.60 +52.03%
multiapps/steffensen.variables_transient/app_end_transfers_end_steffensen_sub 3.17 4.81 +51.93%
multiapps/steffensen_postprocessor.pp_transient/app_end_transfers_end 2.34 3.55 +51.87%
dirackernels/front_tracking.test 2.88 4.37 +51.76%
outputs/format.json_line_info 18.91 28.68 +51.66%
geomsearch/3d_moving_penetration_smoothing.disjoint/pl_test3nnstt 2.36 3.58 +51.60%
meshmodifiers/element_subdomain_modifier.amr_moving_boundary_3d 2.12 3.21 +51.60%
materials/derivative_material_interface.ad_analytic_derivatives/derivative_jacobian 7.02 10.63 +51.59%
transfers/coord_transform/both-transformed/pp_interpolation.both-transformed 8.59 13.01 +51.49%
multiapps/secant_postprocessor.pp_transient/app_end_transfers_end_secant_sub 3.56 5.39 +51.19%
bcs/periodic.testperiodic_dp 3.47 5.24 +51.14%
kernels/vector_fe.ad_vector_fe_jacobian 6.53 9.86 +51.11%
fvkernels/block-restriction.jac 2.44 3.69 +51.05%
outputs/perf_graph/multi_app.perf/with_sub_cycle 2.13 3.22 +50.99%
multiapps/quadrature_point_multiapp.test 2.69 4.05 +50.78%
time_integrators/convergence.implicit_lstabledirk3/level0 2.35 3.53 +50.73%
parser/cli_multiapp_single.cli_override_single 2.38 3.59 +50.60%
materials/derivative_sum_material.random_ic/ad_validating 26.38 39.69 +50.48%
multiapps/transient_multiapp.group/dt_from_multi 2.25 3.38 +50.36%
time_integrators/convergence.implicit_midpoint/level2 5.15 7.74 +50.33%
outputs/debug.show_execution_order/regular_bcs 2.84 4.27 +50.23%
kernels/body_force.ad_mat_forcing_function_test 8.24 12.36 +50.11%

Modules test summary

Compared against 7323e92 in job civet.inl.gov/job/3361666.

Removed tests

Added tests

Run time changes

Test Base (s) Head (s) +/-
solid_mechanics/test:lagrangian/cartesian/total/rates.truesdell_shear 3.65 9.06 +148.16%
thermal_hydraulics/test:problems/pressure_drop.tests/without_junction 2.35 4.29 +82.84%
solid_mechanics/test:lagrangian/cartesian/total/homogenization/convergence.sd-stress_right_stab 4.51 8.15 +80.69%
contact/test:ring_contact.ring_contact 2.93 5.27 +79.95%
solid_mechanics/test:lagrangian/materials/convergence.neohookean 3.49 6.24 +78.91%
solid_mechanics/test:rate_independent_cyclic_hardening.linear_kinharden_nonsymmetric_strain_controlled 17.39 30.92 +77.81%
thermal_hydraulics/test:components/inlet_mass_flow_rate_1phase.jacobian-water97 7.55 13.37 +77.13%
solid_mechanics/test:lagrangian/cartesian/total/cross_material/correctness.flow_curve 2.20 3.88 +76.85%
subchannel/test:problems/SFR/sodium-19pin.test_implicit 2.47 4.34 +75.72%
navier_stokes/test:finite_volume/pins/channel-flow/porosity_jump/formloss.single-contraction 6.09 10.70 +75.53%
stochastic_tools/test:web_server_control.stochastic_control/normal 3.19 5.60 +75.51%
heat_transfer/test:view_factors_symmetry.cavity_with_pillars 2.50 4.40 +75.50%
heat_transfer/test:interface_heating_mortar.transient_joule_heating_constraint 2.06 3.60 +75.16%
navier_stokes/test:finite_volume/pins/channel-flow/porosity_jump/formloss.single-expansion 2.76 4.83 +75.04%
navier_stokes/test:finite_volume/ins/channel-flow/segregated/3d.3d-segregated-energy 7.95 13.91 +75.01%
stochastic_tools/examples/surrogates/polynomial_regression.train/normal 2.17 3.79 +74.90%
navier_stokes/test:finite_element/ins/mms/supg.adv_dominated_supg_stabilized 2.88 5.01 +74.25%
navier_stokes/test:finite_element/ins/boussinesq.exo_stab 2.28 3.97 +74.02%
thermal_hydraulics/tutorials/single_phase_flow.tutorial/05 5.42 9.43 +73.93%
stochastic_tools/test:reporters/morris.morris_vec/distributed 3.32 5.77 +73.91%
navier_stokes/test:finite_element/ins/hdg/ip/lid-driven.lid_driven_fsp 10.84 18.84 +73.78%
thermal_hydraulics/tutorials/single_phase_flow.tutorial/04 4.24 7.36 +73.49%
combined/test:thermo_mech.ad-thermo_mech-jac 12.57 21.80 +73.47%
solid_mechanics/test:ad_anisotropic_creep.anis_mech_hill_tensor_creep_small_tiny_step_ts_limit_test 2.11 3.65 +73.36%
contact/test:glued.glued_contact_mechanical_constraint 3.56 6.17 +73.33%
combined/examples/optimization/multi-load.square 2.21 3.84 +73.27%
thermal_hydraulics/tutorials/single_phase_flow.tutorial/03 2.58 4.47 +73.16%
combined/test:axisymmetric_2d3d_solution_function.axisymmetric_2d3d_solution_function_3dz_scale 2.32 4.02 +73.15%
solid_mechanics/test:lagrangian/cartesian/total/homogenization/residual_and_jacobian.3d-stress 2.37 4.09 +72.68%
navier_stokes/test:finite_volume/pins/channel-flow/segregated.2d-momentum-pressure-slip 7.53 13.00 +72.65%
navier_stokes/test:finite_volume/pins/channel-flow/segregated.2d-momentum-friction 7.72 13.32 +72.61%
navier_stokes/test:finite_volume/pins/channel-flow/heated.heated/kappa-action 4.43 7.64 +72.59%
navier_stokes/test:finite_volume/pins/channel-flow/porosity_jump/formloss.multiple 8.53 14.72 +72.53%
combined/test:optimization/invOpt_elasticity_modular.elasticity_inversion_neml2 6.16 10.62 +72.52%
contact/test:mechanical_constraint.frictionless_kinematic_gap_offset 2.55 4.40 +72.49%
heat_transfer/test:verify_against_analytical.ad_2D_steady_state_jacobian 8.67 14.96 +72.48%
combined/examples/publications/rapid_dev.fig7a 2.60 4.47 +72.44%
navier_stokes/test:finite_volume/limiters/lid-driven-segregated.advection_limiting_schemes/min_mod_run 2.11 3.64 +72.34%
navier_stokes/test:finite_element/ins/lid_driven/mixed-transient-steady.mixed 2.20 3.79 +72.31%
solid_mechanics/test:ad_smeared_cracking.exponential 7.29 12.55 +72.23%
stochastic_tools/test:reporters/sobol.sobol_vec 5.68 9.77 +72.02%
solid_mechanics/test:lagrangian/cartesian/total/homogenization/large-tests.3d-stress 2.27 3.90 +71.97%
phase_field/test:PolynomialFreeEnergy.direct_order8 2.44 4.19 +71.83%
heat_transfer/test:gap_heat_transfer_mortar.gap_heat_transfer_3d_mortar_hex20 7.16 12.30 +71.81%
contact/test:explicit_dynamics.optimized_contact 2.79 4.79 +71.81%
solid_mechanics/test:lagrangian/cartesian/total/cross_material/convergence.plastic_j2_large_neither 2.69 4.62 +71.79%
solid_mechanics/test:lagrangian/cartesian/total/rates.green_naghdi_jacobian 3.20 5.49 +71.78%
stochastic_tools/test:reporters/morris.morris_vec/root 3.28 5.63 +71.76%
navier_stokes/test:finite_volume/ins/lid-driven/segregated.momentum-pressure 7.55 12.97 +71.68%
contact/test:mortar_dynamics.block-dynamics-action 3.35 5.74 +71.64%
phase_field/test:grain_tracker_test.test_elemental 6.22 10.67 +71.61%
combined/test:adaptive_timestepping.test_function_change_restart1 2.88 4.94 +71.60%
contact/test:mortar_dynamics.block-dynamics-reference 4.76 8.17 +71.58%
combined/test:optimization/optimization_density_update.top_opt_2d_pde_filter 6.02 10.32 +71.38%
phase_field/test:grain_growth.thumb 2.65 4.54 +71.30%
combined/test:axisymmetric_2d3d_solution_function.axisymmetric_2d3d_solution_function_3dy_scale 2.28 3.91 +71.29%
navier_stokes/test:finite_volume/ins/channel-flow/segregated/3d.3d-segregated-momentum 5.03 8.62 +71.21%
solid_mechanics/test:temperature_dependent_hardening.ADtest 2.59 4.43 +71.20%
navier_stokes/examples/laser-welding.ALE/3d-fe 12.83 21.96 +71.13%
combined/test:cavity_pressure.values/initial_temperature 2.15 3.68 +71.01%
navier_stokes/test:finite_volume/ins/channel-flow/linear-segregated/2d.energy_boussinesq_pimple-physics 3.09 5.29 +70.95%
navier_stokes/test:finite_volume/materials/flow_diode.controlled/time 6.52 11.15 +70.91%
navier_stokes/test:finite_volume/ins/lid-driven/segregated.with-buoyancy 2.95 5.05 +70.78%
contact/test:avoid-aligned-node-exception.test 3.43 5.85 +70.74%
thermal_hydraulics/test:problems/pressure_drop.tests/with_junction 2.75 4.70 +70.68%
combined/test:electromagnetic_joule_heating.copper_wire_heating 5.36 9.15 +70.66%
navier_stokes/test:finite_volume/wcns/materials.transient_using_h 4.00 6.82 +70.65%
solid_mechanics/test:finite_strain_elastic_anisotropy.3d_bar_orthotropic_90deg_rotation_ad 3.78 6.44 +70.56%
heat_transfer/test:radiation_transfer_symmetry.test/unfolded 2.72 4.63 +70.44%
thermal_hydraulics/test:problems/area_constriction.without_junction 3.40 5.79 +70.35%
contact/test:mortar_aux_kernels.block-dynamics-aux-wear 7.02 11.95 +70.31%
solid_mechanics/test:substepping.output 2.27 3.86 +70.30%
solid_mechanics/test:lagrangian/materials/convergence.pk_stvenant 3.34 5.68 +70.27%
solid_mechanics/test:ad_anisotropic_creep.ad_aniso_creep_z_3d 3.54 6.03 +70.16%
navier_stokes/test:finite_volume/ins/cht/conjugate_heat_transfer.robin_robin/bottom 3.78 6.42 +70.14%
solid_mechanics/test:material_limit_time_step/creep.test5a_lim_on_initial 2.95 5.02 +70.12%
combined/test:optimization/optimization_density_update.top_opt_2d 5.60 9.52 +69.97%
solid_mechanics/test:ad_anisotropic_creep.ad_aniso_iso_aniso 4.01 6.82 +69.94%
navier_stokes/test:finite_volume/ins/channel-flow/segregated/2d.slip-with-friction 5.93 10.08 +69.94%
contact/tutorials/introduction.step02 2.63 4.48 +69.94%
misc/test:sensor_postprocessor.time_delay_test 2.54 4.32 +69.91%
navier_stokes/test:finite_volume/two_phase/mixture_model.mixture_rayleigh_bernard_two_phase 14.09 23.94 +69.90%
phase_field/test:initial_conditions.ellipsoids/SmoothSuperellipsoidIC 2.11 3.58 +69.86%
phase_field/test:mobility_derivative.mobility_derivative_direct_coupled_test 2.60 4.41 +69.85%
solid_mechanics/test:dynamics/acceleration_bc.acceleration_bc 5.85 9.92 +69.79%
combined/test:optimization/invOpt_bc_convective.taolmvm 2.17 3.68 +69.62%
solid_mechanics/test:beam/dynamic.dyn_timoshenko 2.99 5.07 +69.62%
navier_stokes/test:finite_element/ins/hdg/ip/lid-driven.lid-driven/condensed 2.07 3.50 +69.58%
heat_transfer/test:gap_heat_transfer_mortar.gap_heat_transfer_sphere3d_mortar 3.97 6.74 +69.55%
navier_stokes/test:finite_volume/wcns/materials.transient_using_h-physics-defines-functormats 3.99 6.77 +69.48%
stochastic_tools/test:multiapps/nested_multiapp.parameter_transfer/normal 7.24 12.28 +69.45%
navier_stokes/test:finite_volume/ins/channel-flow.scalar-transport 4.56 7.73 +69.45%
combined/examples/geochem-porous_flow/geotes_2D.aquifer_geochemistry_only 2.04 3.46 +69.44%
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@nmnobre nmnobre merged commit 53d8dad into idaholab:next Nov 7, 2025
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