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Fix trycatch hanging #190

Merged
merged 7 commits into from
Dec 1, 2021
Merged

Fix trycatch hanging #190

merged 7 commits into from
Dec 1, 2021

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alexvpickering
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@alexvpickering alexvpickering commented Nov 28, 2021

Background

Link to issue

https://biomage.atlassian.net/browse/BIOMAGE-1392

https://biomage.atlassian.net/browse/BIOMAGE-1556

Link to staging deployment URL

https://ui-alex-ui569-pipe190.scp-staging.biomage.net/

Links to any Pull Requests related to this

hms-dbmi-cellenics/ui#569

Anything else the reviewers should know about the changes here

--> RESTORE STAGING RAM BEFORE MERGE <--

Test data: https://drive.google.com/drive/u/1/folders/1ioY1k6Or_461NtbH60npiCJfy8DPgKs6
NOTE: hangs in productions, not in staging

Cause of issue: aryoda/tryCatchLog#68

Changes

Code changes

Definition of DONE

Your changes will be ready for merging after each of the steps below have been completed:

Testing

  • Unit tests written
  • Tested locally with Inframock (with latest production data downloaded with biomage experiment pull)
  • Deployed to staging
  • Passed integration tests

To set up easy local testing with inframock, follow the instructions here: https://github.com/biomage-ltd/inframock
To deploy to the staging environment, follow the instructions here: https://github.com/biomage-ltd/biomage-utils

Documentation updates

Is all relevant documentation updated to reflect the proposed changes in this PR?

  • Relevant Github READMEs updated
  • Relevant wiki pages created/updated

Approvers

  • Approved by a member of the core engineering team
  • (UX changes) Approved by vickymorrison (this is her username, tag her if you need approval)

Just before merging:

Optional

  • Photo of a cute animal attached to this PR

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codecov bot commented Nov 28, 2021

Codecov Report

Merging #190 (2f69cab) into master (686d98d) will not change coverage.
The diff coverage is 0.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #190   +/-   ##
=======================================
  Coverage   65.77%   65.77%           
=======================================
  Files          19       19           
  Lines        1347     1347           
=======================================
  Hits          886      886           
  Misses        461      461           
Impacted Files Coverage Δ
pipeline-runner/R/qc-6-integrate_scdata.R 92.90% <0.00%> (ø)

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
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@@ -231,7 +231,7 @@ jobs:
KUBERNETES_ENV="staging"
REPLICA_COUNT="0"
IMAGE_GLOB="${IMAGE_TAG/$GITHUB_SHA/*}"
MEMORY_REQUEST="4Gi"
MEMORY_REQUEST="16Gi"
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do you still need this change? I assume it was added just for testing?

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@alexvpickering alexvpickering Dec 1, 2021

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Yes just for testing. I'll remove prior to merging (bolded in Conversation that this needs to happen before merge) in case you or someone else also wants to test

@alexvpickering alexvpickering merged commit 90483ff into master Dec 1, 2021
@alexvpickering alexvpickering deleted the fix-trycatch-hanging branch December 1, 2021 21:57
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2 participants