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Prevalence of Severe Acute Respiratory Syndrome related Coronavirus (SARSr)
Philip Tzou edited this page Nov 23, 2021
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The prevalence data of Severe Acute Respiratory Syndrome-related Coronavirus (SARSr) is calculated using following sequences:
| Accession | Host | Isolate Name |
|---|---|---|
| NC_045512 | Human | SARS-CoV-2 Wuhan-Hu-1 |
| NC_004718 | Human | SARS-CoV Tor2 |
| KY352407 | Bat | BtKY72 |
| KJ473812 | Bat | BtRf-BetaCoV/HeB2013 |
| KJ473811 | Bat | BtRf-BetaCoV/JL2012 |
| MK211374 | Bat | BtRl-BetaCoV/SC2018 |
| KJ473816 | Bat | BtRs-BetaCoV/YN2013 |
| DQ022305 | Bat | HKU3-1 |
| KF569996 | Bat | LYRa11 |
| MT040335 | Pangolin | PCoV_GX-P5L |
| MN996532 | Bat | RaTG13 |
| KY417145 | Bat | Rf4092 |
| DQ412043 | Bat | Rm1 |
| JX993987 | Bat | Rp/Shaanxi2011 |
| DQ071615 | Bat | Rp3 |
| KY417147 | Bat | Rs4237 |
| KY417148 | Bat | Rs4247 |
| KY417150 | Bat | Rs4874 |
| KC881005 | Bat | RsSHC014 |
| KP886808 | Bat | YNLF_31C |
| MG772933 | Bat | bat-SL-CoVZC45 |
| EPI_ISL_412976 | Bat | RmYN01 |
| EPI_ISL_412977 | Bat | RmYN02 |
| MT799521 | Pangolin | cDNA8-S |
The prevalence data is created using script from https://github.com/hivdb/chiro-alignment/blob/master/bash_scripts/stat_prevalence.sh. TODO: write description of this script.
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