chore: release v0.1.2

[nh13]

🤖 New release

• fgumi-bgzf: 0.1.0 -> 0.1.2
• fgumi-dna: 0.1.0 -> 0.1.2
• fgumi-metrics: 0.1.1 -> 0.1.2
• fgumi-raw-bam: 0.1.1 -> 0.1.2
• fgumi-sam: 0.1.1 -> 0.1.2
• fgumi-consensus: 0.1.1 -> 0.1.2
• fgumi-umi: 0.1.0 -> 0.1.2
• fgumi: 0.1.1 -> 0.1.2

Changelog

fgumi-bgzf

[0.1.2] - 2026-03-06

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)

Refactor

• Deduplicate decompression logic and remove dead code (#134)
• Extract shared decompress_and_verify helper (#143)

fgumi-dna

[0.1.2] - 2026-03-06

Bug Fixes

• Expand ci-fmt and ci-lint to all workspace crates (#162)

Features

• Add --allow-unmapped flag for grouping unmapped reads by UMI (#39)

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)

Refactor

• Simplify redundant try_from casts and use byte iteration (#133)
• Extract complement_base_preserve_case and remove unnecessary binding (#142)

fgumi-metrics

[0.1.2] - 2026-03-06

Bug Fixes

• Expand ci-fmt and ci-lint to all workspace crates (#162)

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)
• Bump noodles in the all-cargo-deps group (#131)

Refactor

• Improve code reuse, quality, and efficiency in fgumi-metrics (#130)
• Consolidate UmiCountTracker and remove ALL_REJECTIONS duplication (#145)
• Replace TagFamilySizeMetric with FamilySizeMetrics and remove dead parameter (#153)

fgumi-raw-bam

[0.1.2] - 2026-03-06

Bug Fixes

• Expand ci-fmt and ci-lint to all workspace crates (#162)

Documentation

• Add noodles PR links to vendored/raw-record comments (#159)

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)
• Bump noodles in the all-cargo-deps group (#131)

Refactor

• Deduplicate aux iteration, use field accessors, consolidate decode tables (#135)
• Extract shared aux traversal and CIGAR op helpers (#144)
• Remove dead TemplateCoordinateKey and compare_template_coordinate_raw (#161)

fgumi-sam

[0.1.2] - 2026-03-06

Bug Fixes

• Use safe conversions for CIGAR ref span and revcomp string (#158)
• Expand ci-fmt and ci-lint to all workspace crates (#162)

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)
• Bump noodles in the all-cargo-deps group (#131)

Refactor

• Reduce duplication and improve code reuse in fgumi-sam (#138)
• Reuse shared utilities and avoid inner-loop allocations (#147)

fgumi-consensus

[0.1.2] - 2026-03-06

Bug Fixes

• Expand ci-fmt and ci-lint to all workspace crates (#162)

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)
• Bump noodles in the all-cargo-deps group (#131)

Refactor

• Remove dead code and unify duplicated logic in fgumi-consensus (#139)
• Precompute phred threshold and eliminate redundant error-counting pass (#148)

fgumi-umi

[0.1.2] - 2026-03-06

Bug Fixes

• Expand ci-fmt and ci-lint to all workspace crates (#162)

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)

Refactor

• Improve code quality and efficiency in fgumi-umi (#137)
• Use binary search for count_index and deduplicate MoleculeId formatting (#146)

fgumi

[0.1.2] - 2026-03-06

Bug Fixes

• Clamp compute_position fallback and validate sort-order (#156)
• Expand ci-fmt and ci-lint to all workspace crates (#162)

Documentation

• Add noodles PR links to vendored/raw-record comments (#159)

Features

• Add --allow-unmapped flag for grouping unmapped reads by UMI (#39)

Miscellaneous Tasks

• Lockstep workspace versions and fix publish workflow (#132)
• Bump noodles in the all-cargo-deps group (#131)

Refactor

• Improve code reuse, quality, and efficiency in fgumi-metrics (#130)
• Remove dead code and unify duplicated logic in fgumi-consensus (#139)
• Consolidate duplicated hash logic and remove dead code (#140)
• Remove dead code and improve efficiency in consensus commands (#154)
• Extract complement_base_preserve_case and remove unnecessary binding (#142)
• Deduplicate core lib modules and remove redundant state (#151)
• Extract generic verify helper and deduplicate test code (#152)
• Deduplicate simulate utilities and clip header logic (#155)
• Deduplicate utilities and hoist per-record hasher construction (#149)
• Deduplicate scheduler constants and shared functions (#150)
• Replace TagFamilySizeMetric with FamilySizeMetrics and remove dead parameter (#153)
• Remove dead TemplateCoordinateKey and compare_template_coordinate_raw (#161)

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📥 Commits

Reviewing files that changed from the base of the PR and between e629dfc and 04cce53.

⛔ Files ignored due to path filters (1)

• Cargo.lock is excluded by !**/*.lock

📒 Files selected for processing (9)

• CHANGELOG.md
• Cargo.toml
• crates/fgumi-bgzf/CHANGELOG.md
• crates/fgumi-consensus/CHANGELOG.md
• crates/fgumi-dna/CHANGELOG.md
• crates/fgumi-metrics/CHANGELOG.md
• crates/fgumi-raw-bam/CHANGELOG.md
• crates/fgumi-sam/CHANGELOG.md
• crates/fgumi-umi/CHANGELOG.md

📝 Walkthrough

Walkthrough

This release updates the project version from 0.1.1 to 0.1.2. The Cargo.toml file is updated with the new version in both workspace.package and all workspace dependencies. Corresponding CHANGELOG.md entries are added across the main project and all workspace crates, documenting miscellaneous tasks and refactoring efforts completed in this release. The changelog entries reference related pull requests and include auto-generation markers. No code logic or functionality changes are introduced.

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Title check	✅ Passed	The PR title 'chore: release v0.1.2' directly and clearly describes the main change: a version release bumping all workspace crates to v0.1.2.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Description check	✅ Passed	The PR description clearly outlines the release of version 0.1.2 with specific version bumps for each workspace crate and detailed changelogs.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

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• Create PR with unit tests
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• Commit unit tests in branch release-plz-2026-03-03T18-52-48Z

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.09%. Comparing base (3d3d194) to head (04cce53).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #157   +/-   ##
=======================================
  Coverage   84.09%   84.09%           
=======================================
  Files         128      128           
  Lines       51771    51771           
=======================================
+ Hits        43538    43539    +1     
+ Misses       8233     8232    -1     

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