Merge pull request #143 from epiforecasts/nikosbosse-patch-update-gh-…

…actions Update check-full.yaml
epiforecasts · Nov 21, 2021 · 3b6040d · 3b6040d
2 parents 1ad1921 + 89dc377
commit 3b6040d
Showing 1 changed file with 10 additions and 9 deletions.
diff --git a/.github/workflows/check-full.yaml b/.github/workflows/check-full.yaml
@@ -18,12 +18,10 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'devel'}
-          - {os: macOS-latest,   r: 'release'}
+          - {os: macOS-latest, r: 'release'}
           - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-16.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
-          - {os: ubuntu-16.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
-
+          - {os: ubuntu-20.04, r: 'release'}
+          - {os: ubuntu-20.04, r: 'oldrel'}
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       RSPM: ${{ matrix.config.rspm }}
@@ -58,15 +56,18 @@ jobs:
         env:
           RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
         run: |
-          Rscript -e "remotes::install_github('r-hub/sysreqs')"
-          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-          sudo -s eval "$sysreqs"
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+          sudo apt-get -y install libudunits2-dev libgdal-dev libqpdf-dev libcurl4-openssl-dev
+        shell: bash
+
       - name: Install dependencies
         run: |
           remotes::install_deps(dependencies = TRUE)
           remotes::install_cran("rcmdcheck")
         shell: Rscript {0}
-
       - name: Session info
         run: |
           options(width = 100)