{data}[nvofbf/2024.9] HDF5 v1.14.5

easybuild/easyconfigs/h/HDF5/HDF5-1.14.5-nvompi-2024.09.eb

@@ -0,0 +1,32 @@
+name = 'HDF5'
+# Note: Odd minor releases are only RCs and should not be used.
+version = '1.14.5'
+
+homepage = 'https://portal.hdfgroup.org/display/support'
+description = """HDF5 is a data model, library, and file format for storing and managing data.
+ It supports an unlimited variety of datatypes, and is designed for flexible
+ and efficient I/O and for high volume and complex data."""
+
+toolchain = {'name': 'nvompi', 'version': '2024.9'}
+toolchainopts = {'pic': True, 'usempi': True}
+
+
+source_urls = ['https://github.com/HDFGroup/hdf5/archive']
+sources = ['hdf5_%(version)s.tar.gz']
+patches = ['HDF5-1.14.5_nvompi_fix_use_mpi.patch']
+checksums = [
+    'c83996dc79080a34e7b5244a1d5ea076abfd642ec12d7c25388e2fdd81d26350',  # hdf5_1.14.5.tar.gz
+    '60ef02bdd12ae62d3f284d2434728dc6b9bad61ecacc7ab9320001ce3c337df4',  # HDF5-1.14.5_nvompi_fix_use_mpi.patch
+]
+
+dependencies = [
+    ('zlib', '1.3.1'),
+    ('Szip', '2.1.1'),
+]
+
+postinstallcmds = [
+    'sed -i -r "s, -I[^[:space:]]+H5FDsubfiling , -I%(installdir)s/include ,g" %(installdir)s/bin/h5c++',
+    'sed -i -r "s, -I[^[:space:]]+H5FDsubfiling , -I%(installdir)s/include ,g" %(installdir)s/bin/h5pcc',
+]
+
+moduleclass = 'data'

easybuild/easyconfigs/h/HDF5/HDF5-1.14.5_nvompi_fix_use_mpi.patch

@@ -0,0 +1,88 @@
+# Author: maxim-masterov (SURF)
+# What: Align MPI version with other source files from `testpar` and don't use MPI_F08 
+diff -Nru hdf5-hdf5_1.14.5.orig/fortran/testpar/async.F90 hdf5-hdf5_1.14.5/fortran/testpar/async.F90
+--- hdf5-hdf5_1.14.5.orig/fortran/testpar/async.F90	2025-05-26 18:01:40.435743000 +0200
++++ hdf5-hdf5_1.14.5/fortran/testpar/async.F90	2025-05-26 18:28:22.228635794 +0200
+@@ -17,11 +17,7 @@
+
+ MODULE test_async_APIs
+
+-#ifdef H5_HAVE_MPI_F08
+-  USE MPI_F08
+-#else
+   USE MPI
+-#endif
+   USE HDF5
+   USE TH5_MISC
+   USE TH5_MISC_GEN
+@@ -390,12 +386,7 @@
+
+     INTEGER :: error  ! Error flags
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpierror       ! MPI error flag
+-#ifdef H5_HAVE_MPI_F08
+-    TYPE(MPI_COMM) :: comm
+-    TYPE(MPI_INFO) :: info
+-#else
+     INTEGER(KIND=MPI_INTEGER_KIND) :: comm, info
+-#endif
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpi_size, mpi_rank
+
+     comm = MPI_COMM_WORLD
+@@ -595,12 +586,7 @@
+
+     INTEGER :: error
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpierror       ! MPI error flag
+-#ifdef H5_HAVE_MPI_F08
+-    TYPE(MPI_COMM) :: comm
+-    TYPE(MPI_INFO) :: info
+-#else
+     INTEGER(KIND=MPI_INTEGER_KIND) :: comm, info
+-#endif
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpi_size, mpi_rank
+
+     comm = MPI_COMM_WORLD
+@@ -728,12 +714,7 @@
+
+     INTEGER :: error  ! Error flags
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpierror       ! MPI error flag
+-#ifdef H5_HAVE_MPI_F08
+-    TYPE(MPI_COMM) :: comm
+-    TYPE(MPI_INFO) :: info
+-#else
+     INTEGER(KIND=MPI_INTEGER_KIND) :: comm, info
+-#endif
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpi_size, mpi_rank
+
+     comm = MPI_COMM_WORLD
+@@ -839,11 +820,7 @@
+
+     INTEGER :: error  ! Error flags
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpierror       ! MPI error flag
+-#ifdef H5_HAVE_MPI_F08
+-    TYPE(MPI_COMM) :: comm
+-#else
+     INTEGER(KIND=MPI_INTEGER_KIND) :: comm
+-#endif
+     INTEGER(KIND=MPI_INTEGER_KIND) :: mpi_size, mpi_rank
+
+     INTEGER(SIZE_T) :: count
+@@ -1267,6 +1244,7 @@
+ PROGRAM async_test
+   USE, INTRINSIC :: ISO_C_BINDING, ONLY : C_INT64_T
+   USE test_async_APIs
++  USE MPI
+
+   IMPLICIT NONE
+
+@@ -1275,11 +1253,7 @@
+   INTEGER(KIND=MPI_INTEGER_KIND) :: mpi_size               ! number of processes in the group of communicator
+   INTEGER(KIND=MPI_INTEGER_KIND) :: mpi_rank               ! rank of the calling process in the communicator
+   INTEGER(KIND=MPI_INTEGER_KIND) :: required, provided
+-#ifdef H5_HAVE_MPI_F08
+-  TYPE(MPI_DATATYPE) :: mpi_int_type
+-#else
+   INTEGER(KIND=MPI_INTEGER_KIND) :: mpi_int_type
+-#endif
+
+   INTEGER(HID_T) :: vol_id
+   INTEGER :: hdferror