{data}[nvofbf/2024.9] HDF5 v1.14.5

[maxim-masterov]

HDF5-1.14.5 with MPI

Depends on:

• {toolchain}[system/system] nvofbf v2024.9, nvompi v2024.9 #21639

[github-actions]

Updated software HDF5-1.14.5-nvompi-2024.09.eb

Diff against HDF5-1.14.6-GCC-14.3.0-serial.eb

easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-GCC-14.3.0-serial.eb

diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-GCC-14.3.0-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.14.5-nvompi-2024.09.eb
index 9357060d4b..df341e4dde 100644
--- a/easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-GCC-14.3.0-serial.eb
+++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.14.5-nvompi-2024.09.eb
@@ -1,53 +1,32 @@
-easyblock = 'CMakeMake'
-
 name = 'HDF5'
 # Note: Odd minor releases are only RCs and should not be used.
-version = '1.14.6'
-versionsuffix = '-serial'
+version = '1.14.5'
 
 homepage = 'https://portal.hdfgroup.org/display/support'
 description = """HDF5 is a data model, library, and file format for storing and managing data.
  It supports an unlimited variety of datatypes, and is designed for flexible
  and efficient I/O and for high volume and complex data."""
 
-toolchain = {'name': 'GCC', 'version': '14.3.0'}
-toolchainopts = {'pic': True}
+toolchain = {'name': 'nvompi', 'version': '2024.9'}
+toolchainopts = {'pic': True, 'usempi': True}
+
 
 source_urls = ['https://github.com/HDFGroup/hdf5/archive']
 sources = ['hdf5_%(version)s.tar.gz']
-checksums = ['09ee1c671a87401a5201c06106650f62badeea5a3b3941e9b1e2e1e08317357f']
-
-builddependencies = [('CMake', '4.0.3')]
+patches = ['HDF5-1.14.5_nvompi_fix_use_mpi.patch']
+checksums = [
+    'c83996dc79080a34e7b5244a1d5ea076abfd642ec12d7c25388e2fdd81d26350',  # hdf5_1.14.5.tar.gz
+    '60ef02bdd12ae62d3f284d2434728dc6b9bad61ecacc7ab9320001ce3c337df4',  # HDF5-1.14.5_nvompi_fix_use_mpi.patch
+]
 
 dependencies = [
-    ('libaec', '1.1.4'),
-    ('Perl', '5.40.2'),
     ('zlib', '1.3.1'),
+    ('Szip', '2.1.1'),
 ]
 
-preconfigopts = 'export LDFLAGS="$LDFLAGS -pthread" && '
-configopts = ' '.join([
-    '-DHDF5_BUILD_CPP_LIB=ON',
-    '-DHDF5_BUILD_FORTRAN=ON',
-    '-DHDF5_ENABLE_THREADSAFE=ON',
-    '-DALLOW_UNSUPPORTED=ON',  # fortran+threadsafe requires unsupported
-])
-# h5redeploy is shipped in 1.14.6 but not installed by CMake. This will be removed in a future HDF5 release.
 postinstallcmds = [
-    "cp ../hdf5*/bin/h5redeploy.in %(installdir)s/bin/h5redeploy && chmod +x %(installdir)s/bin/h5redeploy",
+    'sed -i -r "s, -I[^[:space:]]+H5FDsubfiling , -I%(installdir)s/include ,g" %(installdir)s/bin/h5c++',
+    'sed -i -r "s, -I[^[:space:]]+H5FDsubfiling , -I%(installdir)s/include ,g" %(installdir)s/bin/h5pcc',
 ]
 
-_extra_binaries = ["h5cc", "h5fc"]
-_h5binaries = ["c++", "copy", "debug", "diff", "dump", "import", "jam", "ls", "mkgrp", "perf_serial", "redeploy",
-               "repack", "repart", "stat", "unjam"]
-_binaries = ["h5%s" % x for x in _h5binaries] + _extra_binaries
-_libs = ["libhdf5%s.%s" % (lib, SHLIB_EXT) for lib in ['', '_cpp', '_fortran', '_hl_cpp', '_hl', '_hl_fortran']]
-
-sanity_check_paths = {
-    'files': [f"bin/{x}" for x in _binaries] + [f"lib/{lib}" for lib in _libs],
-    'dirs': ['include'],
-}
-
-modextravars = {'HDF5_DIR': ''}
-
 moduleclass = 'data'

Diff against HDF5-1.14.6-iimpi-2025a.eb

easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-iimpi-2025a.eb

diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-iimpi-2025a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.14.5-nvompi-2024.09.eb
index 6c064820fd..df341e4dde 100644
--- a/easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-iimpi-2025a.eb
+++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.14.5-nvompi-2024.09.eb
@@ -1,18 +1,23 @@
 name = 'HDF5'
 # Note: Odd minor releases are only RCs and should not be used.
-version = '1.14.6'
+version = '1.14.5'
 
 homepage = 'https://portal.hdfgroup.org/display/support'
 description = """HDF5 is a data model, library, and file format for storing and managing data.
  It supports an unlimited variety of datatypes, and is designed for flexible
  and efficient I/O and for high volume and complex data."""
 
-toolchain = {'name': 'iimpi', 'version': '2025a'}
+toolchain = {'name': 'nvompi', 'version': '2024.9'}
 toolchainopts = {'pic': True, 'usempi': True}
 
+
 source_urls = ['https://github.com/HDFGroup/hdf5/archive']
 sources = ['hdf5_%(version)s.tar.gz']
-checksums = ['09ee1c671a87401a5201c06106650f62badeea5a3b3941e9b1e2e1e08317357f']
+patches = ['HDF5-1.14.5_nvompi_fix_use_mpi.patch']
+checksums = [
+    'c83996dc79080a34e7b5244a1d5ea076abfd642ec12d7c25388e2fdd81d26350',  # hdf5_1.14.5.tar.gz
+    '60ef02bdd12ae62d3f284d2434728dc6b9bad61ecacc7ab9320001ce3c337df4',  # HDF5-1.14.5_nvompi_fix_use_mpi.patch
+]
 
 dependencies = [
     ('zlib', '1.3.1'),

Diff against HDF5-1.14.6-gompi-2025b.eb

easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-gompi-2025b.eb

diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-gompi-2025b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.14.5-nvompi-2024.09.eb
index 22a22c7c1d..df341e4dde 100644
--- a/easybuild/easyconfigs/h/HDF5/HDF5-1.14.6-gompi-2025b.eb
+++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.14.5-nvompi-2024.09.eb
@@ -1,54 +1,32 @@
-easyblock = 'CMakeMake'
-
 name = 'HDF5'
 # Note: Odd minor releases are only RCs and should not be used.
-version = '1.14.6'
+version = '1.14.5'
 
 homepage = 'https://portal.hdfgroup.org/display/support'
 description = """HDF5 is a data model, library, and file format for storing and managing data.
  It supports an unlimited variety of datatypes, and is designed for flexible
  and efficient I/O and for high volume and complex data."""
 
-toolchain = {'name': 'gompi', 'version': '2025b'}
+toolchain = {'name': 'nvompi', 'version': '2024.9'}
 toolchainopts = {'pic': True, 'usempi': True}
 
+
 source_urls = ['https://github.com/HDFGroup/hdf5/archive']
 sources = ['hdf5_%(version)s.tar.gz']
-checksums = ['09ee1c671a87401a5201c06106650f62badeea5a3b3941e9b1e2e1e08317357f']
-
-builddependencies = [('CMake', '4.0.3')]
+patches = ['HDF5-1.14.5_nvompi_fix_use_mpi.patch']
+checksums = [
+    'c83996dc79080a34e7b5244a1d5ea076abfd642ec12d7c25388e2fdd81d26350',  # hdf5_1.14.5.tar.gz
+    '60ef02bdd12ae62d3f284d2434728dc6b9bad61ecacc7ab9320001ce3c337df4',  # HDF5-1.14.5_nvompi_fix_use_mpi.patch
+]
 
 dependencies = [
-    ('libaec', '1.1.4'),
-    ('Perl', '5.40.2'),
     ('zlib', '1.3.1'),
+    ('Szip', '2.1.1'),
 ]
 
-preconfigopts = 'export LDFLAGS="$LDFLAGS -pthread" && '
-preconfigopts += 'export RUNPARALLEL="mpirun -np $${NPROCS:=3}" && '
-configopts = ' '.join([
-    '-DHDF5_BUILD_CPP_LIB=ON',
-    '-DHDF5_BUILD_FORTRAN=ON',
-    '-DHDF5_ENABLE_THREADSAFE=ON',
-    '-DALLOW_UNSUPPORTED=ON',  # fortran+threadsafe requires unsupported
-    '-DHDF5_ENABLE_PARALLEL=ON',
-])
-# h5redeploy is shipped in 1.14.6 but not installed by CMake. This will be removed in a future HDF5 release.
 postinstallcmds = [
-    "cp ../hdf5*/bin/h5redeploy.in %(installdir)s/bin/h5redeploy && chmod +x %(installdir)s/bin/h5redeploy",
+    'sed -i -r "s, -I[^[:space:]]+H5FDsubfiling , -I%(installdir)s/include ,g" %(installdir)s/bin/h5c++',
+    'sed -i -r "s, -I[^[:space:]]+H5FDsubfiling , -I%(installdir)s/include ,g" %(installdir)s/bin/h5pcc',
 ]
 
-_extra_binaries = ["h5perf", "h5pcc", "h5pfc", "ph5diff"]
-_h5binaries = ["c++", "copy", "debug", "diff", "dump", "import", "jam", "ls", "mkgrp", "perf_serial", "redeploy",
-               "repack", "repart", "stat", "unjam"]
-_binaries = ["h5%s" % x for x in _h5binaries] + _extra_binaries
-_libs = ["libhdf5%s.%s" % (lib, SHLIB_EXT) for lib in ['', '_cpp', '_fortran', '_hl_cpp', '_hl', '_hl_fortran']]
-
-sanity_check_paths = {
-    'files': [f"bin/{x}" for x in _binaries] + [f"lib/{lib}" for lib in _libs],
-    'dirs': ['include'],
-}
-
-modextravars = {'HDF5_DIR': ''}
-
 moduleclass = 'data'