{data,phys}[gompi/2024a] CDO v2.4.4, UDUNITS v2.2.28 by stefan-wolfsheimer · Pull Request #21859 · easybuilders/easybuild-easyconfigs

stefan-wolfsheimer · 2024-11-15T14:35:10Z

This PR depends on

{lib,tools}GCCcore/13.3.0,gompi/2024a]-libaec-v1.1.3,-ecCodes-v2.38.3 #21858

github-actions · 2024-11-15T14:35:56Z

Updated software `CDO-2.4.4-gompi-2024a.eb`

Diff against CDO-2.3.0-iimpi-2022a.eb

easybuild/easyconfigs/c/CDO/CDO-2.3.0-iimpi-2022a.eb

diff --git a/easybuild/easyconfigs/c/CDO/CDO-2.3.0-iimpi-2022a.eb b/easybuild/easyconfigs/c/CDO/CDO-2.4.4-gompi-2024a.eb
index 58cf406d16..57b6de8e60 100644
--- a/easybuild/easyconfigs/c/CDO/CDO-2.3.0-iimpi-2022a.eb
+++ b/easybuild/easyconfigs/c/CDO/CDO-2.4.4-gompi-2024a.eb
@@ -6,33 +6,34 @@
 easyblock = 'ConfigureMake'
 
 name = 'CDO'
-version = '2.3.0'
+version = '2.4.4'
+
 
 homepage = 'https://code.zmaw.de/projects/cdo'
 description = """CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data."""
 
-toolchain = {'name': 'iimpi', 'version': '2022a'}
-toolchainopts = {'pic': True, 'usempi': True}
+toolchain = {'name': 'gompi', 'version': '2024a'}
+toolchainopts = {'cstd': 'c++20', 'usempi': True}
 
-source_urls = ['https://code.mpimet.mpg.de/attachments/download/29019/']
+source_urls = ['https://code.mpimet.mpg.de/attachments/download/29649/']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['10c878227baf718a6917837527d4426c2d0022cfac4457c65155b9c57f091f6b']
+checksums = ['49f50bd18dacd585e9518cfd4f55548f692426edfb3b27ddcd1c653eab53d063']
 
 builddependencies = [
-    ('pkgconf', '1.8.0'),
+    ('pkgconf', '2.2.0'),
 ]
 
 dependencies = [
-    ('cURL', '7.83.0'),
-    ('ecCodes', '2.27.0'),
+    ('cURL', '8.7.1'),
+    ('ecCodes', '2.38.3'),
     ('FFTW', '3.3.10'),
-    ('HDF5', '1.12.2'),
-    ('libxml2', '2.9.13'),
-    ('netCDF', '4.9.0'),
-    ('PROJ', '9.0.0'),
+    ('HDF5', '1.14.5'),
+    ('libxml2', '2.12.7'),
+    ('netCDF', '4.9.2'),
+    ('PROJ', '9.4.1'),
     ('Szip', '2.1.1'),
     ('UDUNITS', '2.2.28'),
-    ('util-linux', '2.38'),
+    ('util-linux', '2.40'),
 ]
 
 # Build libcdi
@@ -46,13 +47,11 @@ configopts += "--with-udunits2=$EBROOTUDUNITS --with-util-linux-uuid=$EBROOTUTIL
 # Make sure that right Fortran compiler is used, also on non-x86_64 architectures
 configopts += 'CPPFLAGS="$CPPFLAGS -DgFortran" '
 
-buildopts = "V=1"
-
 sanity_check_paths = {
     'files': ['bin/cdo', 'lib/libcdi.a', 'lib/libcdi.%s' % SHLIB_EXT],
     'dirs': ['include'],
 }
 
-sanity_check_commands = ["cdo --version  2>&1 | grep 'CDI library version : %(version)s'"]
+sanity_check_commands = ["cdo --version  2>&1 | grep 'Climate Data Operators version %(version)s'"]
 
 moduleclass = 'data'

Diff against CDO-2.2.2-gompi-2023b.eb

easybuild/easyconfigs/c/CDO/CDO-2.2.2-gompi-2023b.eb

diff --git a/easybuild/easyconfigs/c/CDO/CDO-2.2.2-gompi-2023b.eb b/easybuild/easyconfigs/c/CDO/CDO-2.4.4-gompi-2024a.eb
index 88087d6059..57b6de8e60 100644
--- a/easybuild/easyconfigs/c/CDO/CDO-2.2.2-gompi-2023b.eb
+++ b/easybuild/easyconfigs/c/CDO/CDO-2.4.4-gompi-2024a.eb
@@ -6,33 +6,34 @@
 easyblock = 'ConfigureMake'
 
 name = 'CDO'
-version = '2.2.2'
+version = '2.4.4'
+
 
 homepage = 'https://code.zmaw.de/projects/cdo'
 description = """CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data."""
 
-toolchain = {'name': 'gompi', 'version': '2023b'}
-toolchainopts = {'cstd': 'c++17', 'usempi': True}
+toolchain = {'name': 'gompi', 'version': '2024a'}
+toolchainopts = {'cstd': 'c++20', 'usempi': True}
 
-source_urls = ['https://code.mpimet.mpg.de/attachments/download/28882/']
+source_urls = ['https://code.mpimet.mpg.de/attachments/download/29649/']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['419c77315244019af41a296c05066f474cccbf94debfaae9e2106da51bc7c937']
+checksums = ['49f50bd18dacd585e9518cfd4f55548f692426edfb3b27ddcd1c653eab53d063']
 
 builddependencies = [
-    ('pkgconf', '2.0.3'),
+    ('pkgconf', '2.2.0'),
 ]
 
 dependencies = [
-    ('cURL', '8.3.0'),
-    ('ecCodes', '2.31.0'),
+    ('cURL', '8.7.1'),
+    ('ecCodes', '2.38.3'),
     ('FFTW', '3.3.10'),
-    ('HDF5', '1.14.3'),
-    ('libxml2', '2.11.5'),
+    ('HDF5', '1.14.5'),
+    ('libxml2', '2.12.7'),
     ('netCDF', '4.9.2'),
-    ('PROJ', '9.3.1'),
+    ('PROJ', '9.4.1'),
     ('Szip', '2.1.1'),
     ('UDUNITS', '2.2.28'),
-    ('util-linux', '2.39'),
+    ('util-linux', '2.40'),
 ]
 
 # Build libcdi

Diff against CDO-2.2.2-gompi-2023a.eb

easybuild/easyconfigs/c/CDO/CDO-2.2.2-gompi-2023a.eb

diff --git a/easybuild/easyconfigs/c/CDO/CDO-2.2.2-gompi-2023a.eb b/easybuild/easyconfigs/c/CDO/CDO-2.4.4-gompi-2024a.eb
index 77cac651f2..57b6de8e60 100644
--- a/easybuild/easyconfigs/c/CDO/CDO-2.2.2-gompi-2023a.eb
+++ b/easybuild/easyconfigs/c/CDO/CDO-2.4.4-gompi-2024a.eb
@@ -6,33 +6,34 @@
 easyblock = 'ConfigureMake'
 
 name = 'CDO'
-version = '2.2.2'
+version = '2.4.4'
+
 
 homepage = 'https://code.zmaw.de/projects/cdo'
 description = """CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data."""
 
-toolchain = {'name': 'gompi', 'version': '2023a'}
-toolchainopts = {'cstd': 'c++17', 'usempi': True}
+toolchain = {'name': 'gompi', 'version': '2024a'}
+toolchainopts = {'cstd': 'c++20', 'usempi': True}
 
-source_urls = ['https://code.mpimet.mpg.de/attachments/download/28882/']
+source_urls = ['https://code.mpimet.mpg.de/attachments/download/29649/']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['419c77315244019af41a296c05066f474cccbf94debfaae9e2106da51bc7c937']
+checksums = ['49f50bd18dacd585e9518cfd4f55548f692426edfb3b27ddcd1c653eab53d063']
 
 builddependencies = [
-    ('pkgconf', '1.9.5'),
+    ('pkgconf', '2.2.0'),
 ]
 
 dependencies = [
-    ('cURL', '8.0.1'),
-    ('ecCodes', '2.31.0'),
+    ('cURL', '8.7.1'),
+    ('ecCodes', '2.38.3'),
     ('FFTW', '3.3.10'),
-    ('HDF5', '1.14.0'),
-    ('libxml2', '2.11.4'),
+    ('HDF5', '1.14.5'),
+    ('libxml2', '2.12.7'),
     ('netCDF', '4.9.2'),
-    ('PROJ', '9.2.0'),
+    ('PROJ', '9.4.1'),
     ('Szip', '2.1.1'),
     ('UDUNITS', '2.2.28'),
-    ('util-linux', '2.39'),
+    ('util-linux', '2.40'),
 ]
 
 # Build libcdi

Updated software `UDUNITS-2.2.28-GCCcore-13.3.0.eb`

Diff against UDUNITS-2.2.28-GCCcore-13.2.0.eb

easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.3.0.eb
index 1170be53a3..12a51d8afd 100644
--- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.3.0.eb
@@ -19,7 +19,7 @@ homepage = 'https://www.unidata.ucar.edu/software/udunits/'
 description = """UDUNITS supports conversion of unit specifications between formatted and binary forms,
  arithmetic manipulation of units, and conversion of values between compatible scales of measurement."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 toolchainopts = {'pic': True}
 
 source_urls = [
@@ -29,9 +29,9 @@ source_urls = [
 sources = [SOURCELOWER_TAR_GZ]
 checksums = ['590baec83161a3fd62c00efa66f6113cec8a7c461e3f61a5182167e0cc5d579e']
 
-builddependencies = [('binutils', '2.40')]
+builddependencies = [('binutils', '2.42')]
 
-dependencies = [('expat', '2.5.0')]
+dependencies = [('expat', '2.6.2')]
 
 sanity_check_paths = {
     'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h',

Diff against UDUNITS-2.2.28-GCCcore-12.3.0.eb

easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-12.3.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.3.0.eb
index 67b179fd47..12a51d8afd 100644
--- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.3.0.eb
@@ -19,7 +19,7 @@ homepage = 'https://www.unidata.ucar.edu/software/udunits/'
 description = """UDUNITS supports conversion of unit specifications between formatted and binary forms,
  arithmetic manipulation of units, and conversion of values between compatible scales of measurement."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 toolchainopts = {'pic': True}
 
 source_urls = [
@@ -29,9 +29,9 @@ source_urls = [
 sources = [SOURCELOWER_TAR_GZ]
 checksums = ['590baec83161a3fd62c00efa66f6113cec8a7c461e3f61a5182167e0cc5d579e']
 
-builddependencies = [('binutils', '2.40')]
+builddependencies = [('binutils', '2.42')]
 
-dependencies = [('expat', '2.5.0')]
+dependencies = [('expat', '2.6.2')]
 
 sanity_check_paths = {
     'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h',

Diff against UDUNITS-2.2.28-GCCcore-12.2.0.eb

easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-12.2.0.eb

diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-12.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.3.0.eb
index 62fb8413bf..12a51d8afd 100644
--- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-12.2.0.eb
+++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.28-GCCcore-13.3.0.eb
@@ -19,7 +19,7 @@ homepage = 'https://www.unidata.ucar.edu/software/udunits/'
 description = """UDUNITS supports conversion of unit specifications between formatted and binary forms,
  arithmetic manipulation of units, and conversion of values between compatible scales of measurement."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 toolchainopts = {'pic': True}
 
 source_urls = [
@@ -29,9 +29,9 @@ source_urls = [
 sources = [SOURCELOWER_TAR_GZ]
 checksums = ['590baec83161a3fd62c00efa66f6113cec8a7c461e3f61a5182167e0cc5d579e']
 
-builddependencies = [('binutils', '2.39')]
+builddependencies = [('binutils', '2.42')]
 
-dependencies = [('expat', '2.4.9')]
+dependencies = [('expat', '2.6.2')]
 
 sanity_check_paths = {
     'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h',

…asyconfigs into CDO2

branfosj · 2024-11-23T11:08:46Z

@boegelbot please test @ generoso

boegelbot · 2024-11-23T11:10:06Z

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=21859 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21859 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14759

Test results coming soon (I hope)...

Details

- notification for comment with ID 2495442008 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

branfosj · 2024-11-23T11:10:24Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-11-23T11:20:09Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21859 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21859 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5329

Test results coming soon (I hope)...

Details

- notification for comment with ID 2495442456 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-23T11:21:01Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/5988add21b296362e74ab88e603ecaf9 for a full test report.

boegelbot · 2024-11-23T11:26:02Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/41512ae922e186c48a557d256c18919e for a full test report.

branfosj · 2024-11-23T13:56:48Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (2 easyconfigs in total)
bear-pg0210u03a.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/8c02c586962adfbd25f7fb2ad9050ba1 for a full test report.

branfosj · 2024-11-23T14:00:17Z

Going in, thanks @stefan-wolfsheimer!

add CDO UDUNITS

9ae86e4

github-actions bot added the update label Nov 15, 2024

stefan-wolfsheimer mentioned this pull request Nov 20, 2024

{tools,geo,lib}[foss/2024a] ANTLR v2.7.7, ESMF 8.7.0, libdap v3.21.0-131, NCO v5.2.9 #21888

Merged

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

978cece

…asyconfigs into CDO2

branfosj added this to the release after 4.9.4 milestone Nov 23, 2024

branfosj approved these changes Nov 23, 2024

View reviewed changes

branfosj merged commit dc405a5 into easybuilders:develop Nov 23, 2024

boegel modified the milestones: release after 4.9.4, 5.0.0 Mar 18, 2025

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{data,phys}[gompi/2024a] CDO v2.4.4, UDUNITS v2.2.28#21859

{data,phys}[gompi/2024a] CDO v2.4.4, UDUNITS v2.2.28#21859
branfosj merged 2 commits intoeasybuilders:developfrom
stefan-wolfsheimer:CDO2

stefan-wolfsheimer commented Nov 15, 2024 •

edited by smoors

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Updated software CDO-2.4.4-gompi-2024a.eb

Updated software UDUNITS-2.2.28-GCCcore-13.3.0.eb

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stefan-wolfsheimer commented Nov 15, 2024 •

edited by smoors

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Updated software `CDO-2.4.4-gompi-2024a.eb`

Updated software `UDUNITS-2.2.28-GCCcore-13.3.0.eb`