{lib,tools}GCCcore/13.3.0,gompi/2024a]-libaec-v1.1.3,-ecCodes-v2.38.3 by stefan-wolfsheimer · Pull Request #21858 · easybuilders/easybuild-easyconfigs

stefan-wolfsheimer · 2024-11-15T14:10:52Z

No description provided.

github-actions · 2024-11-15T14:11:34Z

Updated software `ecCodes-2.38.3-gompi-2024a.eb`

Diff against ecCodes-2.27.0-iimpi-2022a.eb

easybuild/easyconfigs/e/ecCodes/ecCodes-2.27.0-iimpi-2022a.eb

diff --git a/easybuild/easyconfigs/e/ecCodes/ecCodes-2.27.0-iimpi-2022a.eb b/easybuild/easyconfigs/e/ecCodes/ecCodes-2.38.3-gompi-2024a.eb
index 33fddc6886..2aa0915ea2 100644
--- a/easybuild/easyconfigs/e/ecCodes/ecCodes-2.27.0-iimpi-2022a.eb
+++ b/easybuild/easyconfigs/e/ecCodes/ecCodes-2.38.3-gompi-2024a.eb
@@ -1,47 +1,46 @@
 easyblock = 'CMakeMake'
 
 name = 'ecCodes'
-version = '2.27.0'
+version = '2.38.3'
 
 homepage = 'https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home'
 description = """ecCodes is a package developed by ECMWF which provides an application programming interface and
  a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2,
  WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding)."""
 
-toolchain = {'name': 'iimpi', 'version': '2022a'}
+toolchain = {'name': 'gompi', 'version': '2024a'}
 toolchainopts = {'usempi': False}
 
-source_urls = ['https://confluence.ecmwf.int/download/attachments/45757960/']
-sources = ['eccodes-%(version)s-Source.tar.gz']
-checksums = ['ede5b3ffd503967a5eac89100e8ead5e16a881b7585d02f033584ed0c4269c99']
-
-builddependencies = [('CMake', '3.23.1')]
+source_urls = ['https://github.com/ecmwf/eccodes/archive/refs/tags/']
+sources = [{'download_filename': '%(version)s.tar.gz', 'filename': '%(namelower)s-%(version)s.tar.gz'}]
+checksums = ['2f13adc4fbdfa3ea11f75ce4ed8937bf40a8fcedd760a519b15e4e17dedc9424']
 
+builddependencies = [
+    ('CMake', '3.29.3'),
+    ('ecBuild', '3.8.5'),
+]
 dependencies = [
-    ('netCDF', '4.9.0'),
-    ('JasPer', '2.0.33'),
-    ('libjpeg-turbo', '2.1.3'),
-    ('libpng', '1.6.37'),
-    ('zlib', '1.2.12'),
-    ('libaec', '1.0.6'),
+    ('netCDF', '4.9.2'),
+    ('JasPer', '4.2.4'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('libpng', '1.6.43'),
+    ('zlib', '1.3.1'),
+    ('libaec', '1.1.3'),
 ]
 
 # Python bindings are provided by a separate package 'eccodes-python'
-configopts = "-DENABLE_NETCDF=ON -DENABLE_PNG=ON -DENABLE_PYTHON=OFF "
-configopts += "-DENABLE_JPG=ON -DENABLE_JPG_LIBJASPER=ON "
-configopts += "-DENABLE_ECCODES_THREADS=ON"  # multi-threading with pthreads
+configopts = "-DENABLE_NETCDF=ON -DENABLE_PNG=ON -DENABLE_PYTHON=OFF -DENABLE_JPG=ON "
+configopts += "-DENABLE_JPG_LIBJASPER=ON -DENABLE_ECCODES_THREADS=ON"
 
-local_exes = ['%s_%s' % (a, b)
-              for a in ['bufr', 'grib', 'gts', 'metar']
-              for b in ['compare', 'copy', 'dump', 'filter', 'get', 'ls']]
-local_exes += ['codes_%s' % c for c in ['count', 'info', 'split_file']]
 
 sanity_check_paths = {
-    'files': ['bin/%s' % x for x in local_exes] +
-             ['lib/libeccodes_f90.%s' % SHLIB_EXT, 'lib/libeccodes.%s' % SHLIB_EXT],
+    'files': ['bin/bufr_compare', 'bin/bufr_copy', 'bin/bufr_dump', 'bin/bufr_filter', 'bin/bufr_get', 'bin/bufr_ls',
+              'bin/grib_compare', 'bin/grib_copy', 'bin/grib_dump', 'bin/grib_filter', 'bin/grib_get', 'bin/grib_ls',
+              'bin/gts_compare', 'bin/gts_copy', 'bin/gts_dump', 'bin/gts_filter', 'bin/gts_get', 'bin/gts_ls',
+              'bin/metar_compare', 'bin/metar_copy', 'bin/metar_dump', 'bin/metar_filter', 'bin/metar_get',
+              'bin/metar_ls', 'bin/codes_count', 'bin/codes_info', 'bin/codes_split_file',
+              'lib/libeccodes_f90.%s' % SHLIB_EXT, 'lib/libeccodes.%s' % SHLIB_EXT],
     'dirs': ['include'],
 }
 
-sanity_check_commands = ['%s -V' % x for x in local_exes if not x.startswith('codes_')]
-
 moduleclass = 'tools'

Diff against ecCodes-2.31.0-gompi-2022b.eb

easybuild/easyconfigs/e/ecCodes/ecCodes-2.31.0-gompi-2022b.eb

diff --git a/easybuild/easyconfigs/e/ecCodes/ecCodes-2.31.0-gompi-2022b.eb b/easybuild/easyconfigs/e/ecCodes/ecCodes-2.38.3-gompi-2024a.eb
index 5488a82841..2aa0915ea2 100644
--- a/easybuild/easyconfigs/e/ecCodes/ecCodes-2.31.0-gompi-2022b.eb
+++ b/easybuild/easyconfigs/e/ecCodes/ecCodes-2.38.3-gompi-2024a.eb
@@ -1,31 +1,31 @@
 easyblock = 'CMakeMake'
 
 name = 'ecCodes'
-version = '2.31.0'
+version = '2.38.3'
 
 homepage = 'https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home'
 description = """ecCodes is a package developed by ECMWF which provides an application programming interface and
  a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2,
  WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding)."""
 
-toolchain = {'name': 'gompi', 'version': '2022b'}
+toolchain = {'name': 'gompi', 'version': '2024a'}
 toolchainopts = {'usempi': False}
 
 source_urls = ['https://github.com/ecmwf/eccodes/archive/refs/tags/']
 sources = [{'download_filename': '%(version)s.tar.gz', 'filename': '%(namelower)s-%(version)s.tar.gz'}]
-checksums = ['cb4cd3bab9cebd85a00397e12ce8e4a579b2f0a25aaf6df763436cf37db063e1']
+checksums = ['2f13adc4fbdfa3ea11f75ce4ed8937bf40a8fcedd760a519b15e4e17dedc9424']
 
 builddependencies = [
-    ('CMake', '3.24.3'),
-    ('ecBuild', '3.8.0', '', SYSTEM),
+    ('CMake', '3.29.3'),
+    ('ecBuild', '3.8.5'),
 ]
 dependencies = [
-    ('netCDF', '4.9.0'),
-    ('JasPer', '4.0.0'),
-    ('libjpeg-turbo', '2.1.4'),
-    ('libpng', '1.6.38'),
-    ('zlib', '1.2.12'),
-    ('libaec', '1.0.6'),
+    ('netCDF', '4.9.2'),
+    ('JasPer', '4.2.4'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('libpng', '1.6.43'),
+    ('zlib', '1.3.1'),
+    ('libaec', '1.1.3'),
 ]
 
 # Python bindings are provided by a separate package 'eccodes-python'

Diff against ecCodes-2.31.0-gompi-2023b.eb

easybuild/easyconfigs/e/ecCodes/ecCodes-2.31.0-gompi-2023b.eb

diff --git a/easybuild/easyconfigs/e/ecCodes/ecCodes-2.31.0-gompi-2023b.eb b/easybuild/easyconfigs/e/ecCodes/ecCodes-2.38.3-gompi-2024a.eb
index 298c5b7134..2aa0915ea2 100644
--- a/easybuild/easyconfigs/e/ecCodes/ecCodes-2.31.0-gompi-2023b.eb
+++ b/easybuild/easyconfigs/e/ecCodes/ecCodes-2.38.3-gompi-2024a.eb
@@ -1,31 +1,31 @@
 easyblock = 'CMakeMake'
 
 name = 'ecCodes'
-version = '2.31.0'
+version = '2.38.3'
 
 homepage = 'https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home'
 description = """ecCodes is a package developed by ECMWF which provides an application programming interface and
  a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2,
  WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding)."""
 
-toolchain = {'name': 'gompi', 'version': '2023b'}
+toolchain = {'name': 'gompi', 'version': '2024a'}
 toolchainopts = {'usempi': False}
 
 source_urls = ['https://github.com/ecmwf/eccodes/archive/refs/tags/']
 sources = [{'download_filename': '%(version)s.tar.gz', 'filename': '%(namelower)s-%(version)s.tar.gz'}]
-checksums = ['cb4cd3bab9cebd85a00397e12ce8e4a579b2f0a25aaf6df763436cf37db063e1']
+checksums = ['2f13adc4fbdfa3ea11f75ce4ed8937bf40a8fcedd760a519b15e4e17dedc9424']
 
 builddependencies = [
-    ('CMake', '3.27.6'),
-    ('ecBuild', '3.8.0', '', SYSTEM),
+    ('CMake', '3.29.3'),
+    ('ecBuild', '3.8.5'),
 ]
 dependencies = [
     ('netCDF', '4.9.2'),
-    ('JasPer', '4.0.0'),
+    ('JasPer', '4.2.4'),
     ('libjpeg-turbo', '3.0.1'),
-    ('libpng', '1.6.40'),
-    ('zlib', '1.2.13'),
-    ('libaec', '1.0.6'),
+    ('libpng', '1.6.43'),
+    ('zlib', '1.3.1'),
+    ('libaec', '1.1.3'),
 ]
 
 # Python bindings are provided by a separate package 'eccodes-python'

Updated software `libaec-1.1.3-GCCcore-13.3.0.eb`

Diff against libaec-1.0.6-GCCcore-12.2.0.eb

easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-12.2.0.eb

diff --git a/easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-12.2.0.eb b/easybuild/easyconfigs/l/libaec/libaec-1.1.3-GCCcore-13.3.0.eb
index bc29e5b97e..267acc5aa3 100644
--- a/easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-12.2.0.eb
+++ b/easybuild/easyconfigs/l/libaec/libaec-1.1.3-GCCcore-13.3.0.eb
@@ -3,7 +3,7 @@
 easyblock = 'CMakeMake'
 
 name = 'libaec'
-version = '1.0.6'
+version = '1.1.3'
 
 homepage = 'https://gitlab.dkrz.de/k202009/libaec'
 description = """Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers
@@ -11,24 +11,26 @@ description = """Libaec provides fast lossless compression of 1 up to 32 bit wid
 instrument data or numerical model output from weather or climate simulations. While floating point representations
 are not directly supported, they can also be efficiently coded by grouping exponents and mantissa."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 source_urls = ['https://gitlab.dkrz.de/k202009/%(namelower)s/-/archive/v%(version)s']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['abab8c237d85c982bb4d6bde9b03c1f3d611dcacbd58bca55afac2496d61d4be']
+patches = ["libaec-1.1.3_install_binary.patch"]
+
+checksums = ['453de44eb6ea2500843a4cf4d2e97d1be251d2df7beae6c2ebe374edcb11e378',
+             '52fcdeacd9c27108dffafd8109012902fa63fb2e39803670a3ba16f313628f4c']
 
 builddependencies = [
-    ('CMake', '3.24.3'),
-    ('binutils', '2.39'),
+    ('CMake', '3.29.3'),
+    ('binutils', '2.42'),
 ]
 
-
 sanity_check_paths = {
-    'files': ['bin/aec', 'include/%(name)s.h', 'include/szlib.h',
+    'files': ['bin/graec', 'include/%(name)s.h', 'include/szlib.h',
               'lib/libaec.a', 'lib/libaec.%s' % SHLIB_EXT],
-    'dirs': ['share/man'],
+    'dirs': [],
 }
 
-sanity_check_commands = ['aec --help']
+sanity_check_commands = ['graec --help']
 
 moduleclass = 'lib'

Diff against libaec-1.0.6-GCCcore-13.2.0.eb

easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-13.2.0.eb b/easybuild/easyconfigs/l/libaec/libaec-1.1.3-GCCcore-13.3.0.eb
index c458b8ac41..267acc5aa3 100644
--- a/easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/l/libaec/libaec-1.1.3-GCCcore-13.3.0.eb
@@ -3,7 +3,7 @@
 easyblock = 'CMakeMake'
 
 name = 'libaec'
-version = '1.0.6'
+version = '1.1.3'
 
 homepage = 'https://gitlab.dkrz.de/k202009/libaec'
 description = """Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers
@@ -11,24 +11,26 @@ description = """Libaec provides fast lossless compression of 1 up to 32 bit wid
 instrument data or numerical model output from weather or climate simulations. While floating point representations
 are not directly supported, they can also be efficiently coded by grouping exponents and mantissa."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 source_urls = ['https://gitlab.dkrz.de/k202009/%(namelower)s/-/archive/v%(version)s']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['abab8c237d85c982bb4d6bde9b03c1f3d611dcacbd58bca55afac2496d61d4be']
+patches = ["libaec-1.1.3_install_binary.patch"]
+
+checksums = ['453de44eb6ea2500843a4cf4d2e97d1be251d2df7beae6c2ebe374edcb11e378',
+             '52fcdeacd9c27108dffafd8109012902fa63fb2e39803670a3ba16f313628f4c']
 
 builddependencies = [
-    ('CMake', '3.27.6'),
-    ('binutils', '2.40'),
+    ('CMake', '3.29.3'),
+    ('binutils', '2.42'),
 ]
 
-
 sanity_check_paths = {
-    'files': ['bin/aec', 'include/%(name)s.h', 'include/szlib.h',
+    'files': ['bin/graec', 'include/%(name)s.h', 'include/szlib.h',
               'lib/libaec.a', 'lib/libaec.%s' % SHLIB_EXT],
-    'dirs': ['share/man'],
+    'dirs': [],
 }
 
-sanity_check_commands = ['aec --help']
+sanity_check_commands = ['graec --help']
 
 moduleclass = 'lib'

Diff against libaec-1.0.6-GCCcore-12.3.0.eb

easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-12.3.0.eb b/easybuild/easyconfigs/l/libaec/libaec-1.1.3-GCCcore-13.3.0.eb
index e434092683..267acc5aa3 100644
--- a/easybuild/easyconfigs/l/libaec/libaec-1.0.6-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/l/libaec/libaec-1.1.3-GCCcore-13.3.0.eb
@@ -3,7 +3,7 @@
 easyblock = 'CMakeMake'
 
 name = 'libaec'
-version = '1.0.6'
+version = '1.1.3'
 
 homepage = 'https://gitlab.dkrz.de/k202009/libaec'
 description = """Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers
@@ -11,24 +11,26 @@ description = """Libaec provides fast lossless compression of 1 up to 32 bit wid
 instrument data or numerical model output from weather or climate simulations. While floating point representations
 are not directly supported, they can also be efficiently coded by grouping exponents and mantissa."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 source_urls = ['https://gitlab.dkrz.de/k202009/%(namelower)s/-/archive/v%(version)s']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['abab8c237d85c982bb4d6bde9b03c1f3d611dcacbd58bca55afac2496d61d4be']
+patches = ["libaec-1.1.3_install_binary.patch"]
+
+checksums = ['453de44eb6ea2500843a4cf4d2e97d1be251d2df7beae6c2ebe374edcb11e378',
+             '52fcdeacd9c27108dffafd8109012902fa63fb2e39803670a3ba16f313628f4c']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
-    ('binutils', '2.40'),
+    ('CMake', '3.29.3'),
+    ('binutils', '2.42'),
 ]
 
-
 sanity_check_paths = {
-    'files': ['bin/aec', 'include/%(name)s.h', 'include/szlib.h',
+    'files': ['bin/graec', 'include/%(name)s.h', 'include/szlib.h',
               'lib/libaec.a', 'lib/libaec.%s' % SHLIB_EXT],
-    'dirs': ['share/man'],
+    'dirs': [],
 }
 
-sanity_check_commands = ['aec --help']
+sanity_check_commands = ['graec --help']
 
 moduleclass = 'lib'

smoors · 2024-11-17T16:17:45Z

easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: netCDF/4.9.2-gompi-2024a (no easyconfig file or existing module found)'

stefan-wolfsheimer · 2024-11-18T09:50:47Z

easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: netCDF/4.9.2-gompi-2024a (no easyconfig file or existing module found)'

Hi @smoors The easyconfig has been added in this PR: #21862

smoors · 2024-11-19T09:07:08Z

Hi @smoors The easyconfig has been added in this PR: #21862

thanks, we usually mention the PRs it depends on in the first comment, so it's clear why CI fails.

also, neat trick: use the following format, so you can see the status of the dependent PR:
- #21862
like this:

{data}[gompi/2024a] netCDF-C++4 v4.3.1, netCDF-Fortran v4.6.1, netCDF v4.9.2, ... #21862

…asyconfigs into eccodes

smoors · 2024-11-20T17:06:19Z

@boegelbot: please test @ generoso

boegelbot · 2024-11-20T17:10:07Z

@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=21858 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21858 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14742

Test results coming soon (I hope)...

Details

- notification for comment with ID 2489132952 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-20T17:15:40Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/a39314b15c74b17c99e8020ada2ee316 for a full test report.

smoors · 2024-11-22T11:33:57Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-11-22T11:40:09Z

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21858 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21858 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5317

Test results coming soon (I hope)...

Details

- notification for comment with ID 2493545997 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-22T11:43:56Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/7e2b01cf15503fa7765d65f897598150 for a full test report.

smoors

lgtm

smoors · 2024-11-22T12:44:31Z

Going in, thanks @stefan-wolfsheimer!

eccodes

e58d753

github-actions bot added the update label Nov 15, 2024

stefan-wolfsheimer mentioned this pull request Nov 15, 2024

{data,phys}[gompi/2024a] CDO v2.4.4, UDUNITS v2.2.28 #21859

Merged

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

45afc08

…asyconfigs into eccodes

stefan-wolfsheimer mentioned this pull request Nov 20, 2024

{tools,geo,lib}[foss/2024a] ANTLR v2.7.7, ESMF 8.7.0, libdap v3.21.0-131, NCO v5.2.9 #21888

Merged

smoors added this to the release after 4.9.4 milestone Nov 22, 2024

smoors approved these changes Nov 22, 2024

View reviewed changes

smoors merged commit 63974c2 into easybuilders:develop Nov 22, 2024

boegel modified the milestones: release after 4.9.4, 5.0.0 Mar 18, 2025

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{lib,tools}GCCcore/13.3.0,gompi/2024a]-libaec-v1.1.3,-ecCodes-v2.38.3#21858

{lib,tools}GCCcore/13.3.0,gompi/2024a]-libaec-v1.1.3,-ecCodes-v2.38.3#21858
smoors merged 2 commits intoeasybuilders:developfrom
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Updated software ecCodes-2.38.3-gompi-2024a.eb

Updated software libaec-1.1.3-GCCcore-13.3.0.eb

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Updated software `ecCodes-2.38.3-gompi-2024a.eb`

Updated software `libaec-1.1.3-GCCcore-13.3.0.eb`