{data}[foss/2023a] scib v1.1.4, pyparsing v3.1.1, pydot v2.0.0, Deprecated 1.2.14, scikit-misc v0.3.1

easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.14-foss-2023a.eb

@@ -0,0 +1,29 @@
+# author: Denis Kristak (INUITS)
+# update: Pavel Tománek (INUITS)
+
+easyblock = 'PythonBundle'
+
+name = 'Deprecated'
+version = '1.2.14'
+
+homepage = 'https://github.com/tantale/deprecated'
+description = "If you need to mark a function or a method as deprecated, you can use the @deprecated decorator."
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('wrapt', '1.15.0'),
+]
+
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+    (name, version, {
+        'checksums': ['e5323eb936458dccc2582dc6f9c322c852a775a27065ff2b0c4970b9d53d01b3'],
+    }),
+]
+
+moduleclass = 'tools'

easybuild/easyconfigs/p/pydot/pydot-2.0.0-GCCcore-12.3.0.eb

@@ -0,0 +1,28 @@
+# updated: Denis Kristak, Pavel Tománek (INUITS)
+easyblock = 'PythonBundle'
+
+name = 'pydot'
+version = '2.0.0'
+
+homepage = 'https://github.com/pydot/pydot'
+description = "Python interface to Graphviz's Dot language."
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+builddependencies = [('binutils', '2.40')]
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('Python-bundle-PyPI', '2023.06'),
+]
+
+exts_list = [
+    (name, version, {
+        'checksums': ['60246af215123fa062f21cd791be67dda23a6f280df09f68919e637a1e4f3235'],
+    }),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+moduleclass = 'vis'

easybuild/easyconfigs/p/pyparsing/pyparsing-3.1.1-GCCcore-12.3.0.eb

@@ -0,0 +1,33 @@
+easyblock = 'PythonBundle'
+
+name = 'pyparsing'
+version = '3.1.1'
+
+homepage = 'https://github.com/pyparsing/pyparsing'
+description = """The pyparsing module is an alternative approach to creating and
+executing simple grammars, vs. the traditional lex/yacc approach, or the use of
+regular expressions. The pyparsing module provides a library of classes that
+client code uses to construct the grammar directly in Python code."""
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+# matplotlib 3.7.2 requires pyparsing<=3.1, this v3.1.1 will not works with it
+builddependencies = [
+    ('binutils', '2.40'),
+    ('pkgconf', '1.9.5'),
+]
+
+dependencies = [
+    ('Python', '3.11.3'),
+]
+
+exts_list = [
+    (name, version, {
+        'checksums': ['ede28a1a32462f5a9705e07aea48001a08f7cf81a021585011deba701581a0db'],
+    }),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+moduleclass = 'data'

easybuild/easyconfigs/s/scib/scib-1.1.4-foss-2023a.eb

@@ -0,0 +1,43 @@
+# author: Denis Kristak (INUITS)
+# update: Pavel Tománek (INUITS)
+
+easyblock = 'PythonBundle'
+
+name = 'scib'
+version = '1.1.4'
+
+homepage = 'https://github.com/theislab/scib'
+description = "Benchmarking atlas-level data integration in single-cell genomics."
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('SciPy-bundle', '2023.07'),
+    ('Seaborn', '0.13.2'),
+    ('matplotlib', '3.7.2'),
+    ('numba', '0.58.1'),
+    ('scanpy', '1.9.8'),
+    ('h5py', '3.9.0'),
+    ('scikit-learn', '1.3.1'),
+    ('scikit-misc', '0.3.1'),
+    ('leidenalg', '0.10.2'),
+    ('umap-learn', '0.5.5'),
+    ('pydot', '2.0.0'),
+    ('igraph', '0.10.10'),
+    ('python-igraph', '0.11.4'),
+    ('Deprecated', '1.2.14'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+    (name, version, {
+        'checksums': ['b7800f308cd6acc36db6e159a53b0432adb2f48e9b7b434240bc5d696df10bfb'],
+    }),
+]
+
+preinstallopts = "sed -i 's|pandas<2|pandas>=2|g' setup.cfg && "
+
+moduleclass = 'data'

easybuild/easyconfigs/s/scikit-misc/scikit-misc-0.3.1-foss-2023a.eb

@@ -0,0 +1,28 @@
+# updated: Denis Kristak, Pavel Tománek (INUITS)
+easyblock = 'PythonBundle'
+
+name = 'scikit-misc'
+version = '0.3.1'
+
+homepage = 'https://github.com/has2k1/scikit-misc'
+description = "Miscellaneous tools for data analysis and scientific computing"
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('SciPy-bundle', '2023.07'),
+    ('meson-python', '0.13.2'),
+]
+
+exts_list = [
+    ('scikit_misc', version, {
+        'modulename': 'skmisc',
+        'checksums': ['ba813a005ab681df478d719d3c3f03eeda709b6a45e0c1a0056eaef0495c16e4'],
+    }),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+moduleclass = 'lib'