{data}[foss/2023a] scib v1.1.4, pyparsing v3.1.1, pydot v2.0.0, Deprecated 1.2.14, scikit-misc v0.3.1 by pavelToman · Pull Request #19994 · easybuilders/easybuild-easyconfigs

pavelToman · 2024-02-28T13:31:27Z

(created using eb --new-pr)

…-12.3.0.eb, pydot-2.0.0-GCCcore-12.3.0.eb, Deprecated-1.2.14-foss-2023a.eb, scikit-misc-0.3.1-foss-2023a.eb

pavelToman · 2024-02-28T13:31:53Z

@boegelbot please test @ generoso

boegelbot · 2024-02-28T13:35:08Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=19994 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19994 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12988

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-02-28T13:47:22Z

Test report by @boegelbot
FAILED
Build succeeded for 4 out of 5 (5 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/8fe3bbc925db25b995f4f3505c2b0913 for a full test report.

pavelToman · 2024-02-28T14:00:00Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-02-28T14:00:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=19994 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_19994 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 3692

Test results coming soon (I hope)...

Details

- notification for comment with ID 1969045791 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

easybuild/easyconfigs/p/pyparsing/pyparsing-3.1.1-GCCcore-12.3.0.eb

pavelToman · 2024-02-28T14:44:04Z

Waiting for

{lib}[foss/2023a] CellTypist v1.6.2, igraph v0.10.10, python-igraph v0.11.4, leidenalg v0.10.2, libleidenalg v0.11.0 #19981

boegel · 2024-03-01T12:07:28Z

Test report by @boegel
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
node3102.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/27f33641fabce0bcac686bef4d6b0374 for a full test report.

boegel · 2024-03-01T12:34:53Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-03-01T12:40:07Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=19994 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_19994 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 3704

Test results coming soon (I hope)...

Details

- notification for comment with ID 1973113082 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-01T12:43:08Z

Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/f26915d05af2ead62f131ee889a81e77 for a full test report.

boegel · 2024-03-01T12:57:48Z

@boegelbot please test @ generoso

…asyconfigs into 20240228143123_new_pr_scib114

boegelbot · 2024-03-01T13:00:09Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=19994 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19994 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13004

Test results coming soon (I hope)...

Details

- notification for comment with ID 1973151690 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-01T13:07:33Z

Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/8a397daa03cf4e02bd9837a5136ece78 for a full test report.

boegel

lgtm

boegel · 2024-03-01T13:21:43Z

Going in, thanks @pavelToman!

adding easyconfigs: scib-1.1.4-foss-2023a.eb, pyparsing-3.1.1-GCCcore…

780be87

…-12.3.0.eb, pydot-2.0.0-GCCcore-12.3.0.eb, Deprecated-1.2.14-foss-2023a.eb, scikit-misc-0.3.1-foss-2023a.eb

fix newline + whitespace

e55ba4c

jfgrimm reviewed Feb 28, 2024

View reviewed changes

easybuild/easyconfigs/p/pyparsing/pyparsing-3.1.1-GCCcore-12.3.0.eb Outdated Show resolved Hide resolved

replace pkg-config by pkgconfig for pyparsing

fddd3f2

pavelToman mentioned this pull request Feb 29, 2024

Single-cell python bundle request vscentrum/vsc-software-stack#214

Closed

32 tasks

boegel changed the title ~~{data}[foss/2023a] scib v1.1.4, pyparsing v3.1.1, pydot v2.0.0, ...~~ {data}[foss/2023a] scib v1.1.4, pyparsing v3.1.1, pydot v2.0.0, Deprecated 1.2.14, scikit-misg v0.3.1 Mar 1, 2024

boegel changed the title ~~{data}[foss/2023a] scib v1.1.4, pyparsing v3.1.1, pydot v2.0.0, Deprecated 1.2.14, scikit-misg v0.3.1~~ {data}[foss/2023a] scib v1.1.4, pyparsing v3.1.1, pydot v2.0.0, Deprecated 1.2.14, scikit-misc v0.3.1 Mar 1, 2024

boegel added the update label Mar 1, 2024

boegel added this to the 4.x milestone Mar 1, 2024

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

5c9af9f

…asyconfigs into 20240228143123_new_pr_scib114

boegel modified the milestones: 4.x, release after 4.9.0 Mar 1, 2024

boegel approved these changes Mar 1, 2024

View reviewed changes

boegel merged commit c7a6fbe into easybuilders:develop Mar 1, 2024

pavelToman mentioned this pull request Mar 14, 2024

{bio}[foss/2023a] Single-cell-python-bundle v2024.02 #20116

Merged

38 tasks

Flamefire mentioned this pull request Mar 18, 2024

add patch to fix MS_RDONLY for OpenMPI 3.1.x and 4.0.0 #20140

Merged

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pavelToman commented Feb 28, 2024

Uh oh!

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