{bio}[foss/2022a,GCCcore/11.3.0] RELION v5.0.0 draft; DynaMight v0.0.0; relion-blush v0.0.1; relion-classranker v0.0.1; lru-dict v1.2.0; lil-aretomo v0.1.0; makefun 1.15.1; maturin v0.15.3; mdocfile v0.1.0; Rust v1.70.0; starfile v0.5.1; xpdf v4.04; w/ CUDA 11.7.0 w/ PyTorch 1.12.0

[ThomasHoffmann77]

(created using eb --new-pr)
requires #19123 #19120 #18679 #19157 #19228 #19178

[boegelbot]

@ThomasHoffmann77: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/6880910342
Output from first failing test suite run:

ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 868, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 283, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 215, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 463, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 326, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: tsne-cuda/3.0.1-foss-2022a-CUDA-11.7.0 (no easyconfig file or existing module found)'

======================================================================
FAIL: test__parse_easyconfig_RELION-b5.0.0.20231031.de83020-foss-2022a-CUDA-11.7.0.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig RELION-b5.0.0.20231031.de83020-foss-2022a-CUDA-11.7.0.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1609, in innertest
    template_easyconfig_test(self, spec_path)
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1584, in template_easyconfig_test
    self.fail(error_msg)
AssertionError: use of `True` to indicate the system toolchain for dependency CUDA is deprecated, use the `SYSTEM` template constant instead

======================================================================
FAIL: test_pr_sha256_checksums (test.easyconfigs.easyconfigs.EasyConfigTest)
Make sure changed easyconfigs have SHA256 checksums in place.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 999, in test_pr_sha256_checksums
    self.assertTrue(len(checksum_issues) == 0, "No checksum issues:\n%s" % '\n'.join(checksum_issues))
AssertionError: False is not true : No checksum issues:
Checksums missing for one or more sources/patches of extension maturin in maturin-0.15.3-GCCcore-11.3.0.eb: found 1 sources + 0 patches vs 0 checksums

======================================================================
FAIL: test_style_conformance (test.easyconfigs.styletests.StyleTest)
Check the easyconfigs for style
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/base/testing.py", line 97, in assertEqual
    super(TestCase, self).assertEqual(a, b)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/unittest/case.py", line 829, in assertEqual
    assertion_func(first, second, msg=msg)
AssertionError: 1 != 0

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/styletests.py", line 68, in test_style_conformance
    self.assertEqual(result, 0, error_msg)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/base/testing.py", line 119, in assertEqual
    raise AssertionError("%s:\nDIFF%s:\n%s" % (msg, limit, ''.join(diff[:self.ASSERT_MAX_DIFF])))
AssertionError: There shouldn't be any code style errors (and/or warnings), found 1:
/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/easybuild/easyconfigs/r/RELION/RELION-b5.0.0.20231031.de83020-foss-2022a-CUDA-11.7.0.eb:183:1: W391 blank line at end of file

: 1 != 0:
DIFF:
- 1

----------------------------------------------------------------------
Ran 18544 tests in 652.773s

FAILED (failures=3, errors=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[sassy-crick]

@ThomasHoffmann77 You might want to sync your PR with development, something like this:

eb --sync-pr-with-develop NUMBER_OF_PR

[boegel]

No longer relevant since 2022a toolchains are deprecated since foss/2025b was defined, see also https://docs.easybuild.io/policies/toolchains/, so closing...