{vis}[foss/2022a] IMOD v4.12.17 /w CUDA 11.7.0

[ThomasHoffmann77]

(created using eb --new-pr)

[ThomasHoffmann77]

Test report by @ThomasHoffmann77
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
srv-mahamid-01.embl.de - Linux AlmaLinux 8.8, x86_64, AMD EPYC 7513 32-Core Processor, 2 x NVIDIA NVIDIA GeForce RTX 3090, 535.104.05, Python 3.6.8
See https://gist.github.com/ThomasHoffmann77/71a1e97b3ac8f3a9fcdae362a24af57f for a full test report.

[ThomasHoffmann77]

Test report by @ThomasHoffmann77
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
srv-mahamid-01.embl.de - Linux AlmaLinux 8.8, x86_64, AMD EPYC 7513 32-Core Processor, 2 x NVIDIA NVIDIA GeForce RTX 3090, 535.104.05, Python 3.6.8
See https://gist.github.com/ThomasHoffmann77/d610a461b523ce2e565d58410254ef2c for a full test report.

[boegelbot]

@ThomasHoffmann77: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/6012979867
Output from first failing test suite run:

FAIL: test__parse_easyconfig_IMOD-4.12.17-foss-2022a-CUDA-11.7.0.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig IMOD-4.12.17-foss-2022a-CUDA-11.7.0.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1569, in innertest
    template_easyconfig_test(self, spec_path)
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1556, in template_easyconfig_test
    self.assertTrue(dumped_val.startswith(orig_val), error_msg)
AssertionError: False is not true : preconfigopts value 'export QTDIR=$EBROOTQT5 && export HDF5_DIR=$EBROOTHDF5 && export QMAKESPEC=$EBROOTQT5/mkspecs/`qmake -query QMAKE_SPEC` && export CUDA_DIR=$CUDA_HOME && export CFLAGS="$CFLAGS -fallow-argument-mismatch" && sed -i "s/-arch sm_35/`echo %(cuda_cc_space_sep)s|sed "s/\.//g"|   awk '{          printf "-arch sm_"$1;           for (i=1;i<=NF; i++){printf(" -gencode=arch=compute_%%s,code=sm_%%s",$i,$i) }    }'`/g" machines/rhlinux && find -name *.pro -exec sed -i -e '$aQMAKE_CXXFLAGS += $$(CFLAGS)' {} \; && sed -i "s|#!/bin/csh -f|#!/usr/bin/env tcsh|g;s|#! /bin/csh -f|#!/usr/bin/env tcsh|g"  %(builddir)s/%(name)s/{manpages/convert,setup,setup2,machines/rhlinux,packMacApps} &&' should start with 'export QTDIR=$EBROOTQT5 && export HDF5_DIR=$EBROOTHDF5 && export QMAKESPEC=$EBROOTQT5/mkspecs/`qmake -query QMAKE_SPEC` && export CUDA_DIR=$CUDA_HOME && export CFLAGS="$CFLAGS -fallow-argument-mismatch" && sed -i "s/-arch sm_35/`echo %(cuda_cc_space_sep)s|sed "s/\.//g"|   awk '{          printf "-arch sm_"$1;           for (i=1;i<=NF; i++){printf(" -gencode=arch=compute_%%s,code=sm_%%s",$i,$i) }    }'`/g" machines/rhlinux && find -name *.pro -exec sed -i -e '$aQMAKE_CXXFLAGS += $$(CFLAGS)' {} \; && sed -i "s|#!/bin/csh -f|#!/usr/bin/env tcsh|g;s|#! /bin/csh -f|#!/usr/bin/env tcsh|g"  %(builddir)s/IMOD/{manpages/convert,setup,setup2,machines/rhlinux,packMacApps} &&'

----------------------------------------------------------------------
Ran 17911 tests in 1169.888s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[ThomasHoffmann77]

Test report by @ThomasHoffmann77
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
srv-mahamid-01.embl.de - Linux AlmaLinux 8.8, x86_64, AMD EPYC 7513 32-Core Processor, 2 x NVIDIA NVIDIA GeForce RTX 3090, 535.113.01, Python 3.6.8
See https://gist.github.com/ThomasHoffmann77/f76a2452537617dc57407d0833eb00c4 for a full test report.

[boegelbot]

@ThomasHoffmann77: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/6669098845
Output from first failing test suite run:

FAIL: test__parse_easyconfig_IMOD-4.12.17-foss-2022a-CUDA-11.7.0.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig IMOD-4.12.17-foss-2022a-CUDA-11.7.0.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1609, in innertest
    template_easyconfig_test(self, spec_path)
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1596, in template_easyconfig_test
    self.assertTrue(dumped_val.startswith(orig_val), error_msg)
AssertionError: False is not true : preconfigopts value 'export QTDIR=$EBROOTQT5 && export HDF5_DIR=$EBROOTHDF5 && export QMAKESPEC=$EBROOTQT5/mkspecs/`qmake -query QMAKE_SPEC` && export CUDA_DIR=$CUDA_HOME && export CFLAGS="$CFLAGS -fallow-argument-mismatch" && sed -i "s/-arch sm_35/`echo %(cuda_cc_space_sep)s|sed "s/\.//g"|   awk '{          printf "-arch sm_"$1;           for (i=1;i<=NF; i++){printf(" -gencode=arch=compute_%%s,code=sm_%%s",$i,$i) }    }'`/g" machines/rhlinux && find -name *.pro -exec sed -i -e '$aQMAKE_CXXFLAGS += $$(CFLAGS)' {} \; && sed -i "s|#!/bin/csh -f|#!/usr/bin/env tcsh|g;s|#! /bin/csh -f|#!/usr/bin/env tcsh|g"  %(builddir)s/%(name)s/{manpages/convert,setup,setup2,machines/rhlinux,packMacApps} &&' should start with 'export QTDIR=$EBROOTQT5 && export HDF5_DIR=$EBROOTHDF5 && export QMAKESPEC=$EBROOTQT5/mkspecs/`qmake -query QMAKE_SPEC` && export CUDA_DIR=$CUDA_HOME && export CFLAGS="$CFLAGS -fallow-argument-mismatch" && sed -i "s/-arch sm_35/`echo %(cuda_cc_space_sep)s|sed "s/\.//g"|   awk '{          printf "-arch sm_"$1;           for (i=1;i<=NF; i++){printf(" -gencode=arch=compute_%%s,code=sm_%%s",$i,$i) }    }'`/g" machines/rhlinux && find -name *.pro -exec sed -i -e '$aQMAKE_CXXFLAGS += $$(CFLAGS)' {} \; && sed -i "s|#!/bin/csh -f|#!/usr/bin/env tcsh|g;s|#! /bin/csh -f|#!/usr/bin/env tcsh|g"  %(builddir)s/IMOD/{manpages/convert,setup,setup2,machines/rhlinux,packMacApps} &&'

----------------------------------------------------------------------
Ran 18406 tests in 922.528s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[boegelbot]

@ThomasHoffmann77: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/6774466527
Output from first failing test suite run:

FAIL: test__parse_easyconfig_IMOD-4.12.17-foss-2022a-CUDA-11.7.0.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig IMOD-4.12.17-foss-2022a-CUDA-11.7.0.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1609, in innertest
    template_easyconfig_test(self, spec_path)
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 1596, in template_easyconfig_test
    self.assertTrue(dumped_val.startswith(orig_val), error_msg)
AssertionError: False is not true : preconfigopts value 'export QTDIR=$EBROOTQT5 && export CUDACC='%(cuda_cc_cmake)s' && export HDF5_DIR=$EBROOTHDF5 && export QMAKESPEC=$EBROOTQT5/mkspecs/`qmake -query QMAKE_SPEC` && export CUDA_DIR=$CUDA_HOME && export CFLAGS="$CFLAGS -fallow-argument-mismatch" && find -name *.pro -exec sed -i -e '$aQMAKE_CXXFLAGS += $$(CFLAGS)' {} \; && sed -i "s|#!/bin/csh -f|#!/usr/bin/env tcsh|g;s|#! /bin/csh -f|#!/usr/bin/env tcsh|g"  %(builddir)s/%(name)s/{manpages/convert,setup,setup2,machines/rhlinux,packMacApps} &&' should start with 'export QTDIR=$EBROOTQT5 && export CUDACC='%(cuda_cc_cmake)s' && export HDF5_DIR=$EBROOTHDF5 && export QMAKESPEC=$EBROOTQT5/mkspecs/`qmake -query QMAKE_SPEC` && export CUDA_DIR=$CUDA_HOME && export CFLAGS="$CFLAGS -fallow-argument-mismatch" && find -name *.pro -exec sed -i -e '$aQMAKE_CXXFLAGS += $$(CFLAGS)' {} \; && sed -i "s|#!/bin/csh -f|#!/usr/bin/env tcsh|g;s|#! /bin/csh -f|#!/usr/bin/env tcsh|g"  %(builddir)s/IMOD/{manpages/convert,setup,setup2,machines/rhlinux,packMacApps} &&'

----------------------------------------------------------------------
Ran 18489 tests in 663.116s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[ThomasHoffmann77]

Test report by @ThomasHoffmann77
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
srv-mahamid-01.embl.de - Linux AlmaLinux 8.8, x86_64, AMD EPYC 7513 32-Core Processor, 2 x NVIDIA NVIDIA GeForce RTX 3090, 535.113.01, Python 3.6.8
See https://gist.github.com/ThomasHoffmann77/3993a68c3d7930ab45bc11240b7c74e3 for a full test report.

[sassy-crick]

@ThomasHoffmann77 You might want to sync your PR with development, something like this:

eb --sync-pr-with-develop NUMBER_OF_PR

[ThomasHoffmann77]

@ThomasHoffmann77 You might want to sync your PR with development, something like this:

eb --sync-pr-with-develop NUMBER_OF_PR

There is IMOD 5.1 in the meantime. I'll close this PR.