{data}[foss/2022a] scib v1.1.1, scikit-misc v0.1.4, pydot v1.4.2, Deprecated v1.2.13 w/ Python 3.10.4

[deniskristak]

some dependencies of scib-pipeline vscentrum/vsc-software-stack#33

adding easyconfigs:
Deprecated-1.2.13-foss-2022a.eb
numba-0.56.4-foss-2022a.eb
pydot-1.4.2-GCCcore-11.3.0.eb
scanpy-1.9.1-foss-2022a.eb
scib-1.1.1-foss-2022a.eb
scikit-misc-0.1.4-foss-2022a.eb
umap-learn-0.5.3-foss-2022a.eb

requires:

• {data}[foss/2022a] PyTables v3.8.0 #17143

[deniskristak]

#17143
this should go first

[verdurin]

@deniskristak I've merged #17143 - could you look at the reported conflicts, please?

[deniskristak]

@verdurin done

[verdurin]

@deniskristak still one conflict reported.

[deniskristak]

@verdurin done, but based on this, it might be obsolete at this point? or at least scanpy ?
@boegel what do you think?

[jfgrimm]

Test report by @jfgrimm
SUCCESS
Build succeeded for 5 out of 5 (4 easyconfigs in total)
node087.pri.viking.alces.network - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6138 CPU @ 2.00GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/85e48b7d88b77fb8297bde1f9658d929 for a full test report.

[jfgrimm]

@boegelbot please test @ generoso

[boegelbot]

@jfgrimm: Request for testing this PR well received on login1

PR test command 'EB_PR=17142 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17142 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 10069

Test results coming soon (I hope)...

Details

- notification for comment with ID 1406617848 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/c6963a40484cb06ff3de48e9156cd985 for a full test report.

[jfgrimm]

@boegelbot please test @ jsc-zen2

[boegelbot]

@jfgrimm: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17142 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17142 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

• exit code: 0
• output:

Submitted batch job 2117

Test results coming soon (I hope)...

Details

- notification for comment with ID 1406915483 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/570f9154c7b5a2706c147f155c5a7d63 for a full test report.

[jfgrimm]

lgtm

[jfgrimm]

Going in, thanks @deniskristak!