{geo}[foss/2021b] QGIS v3.28.1, GRASS v8.2.0, Qt5Webkit v5.212.0-alpha4, wxPython v4.2.0, attrdict3 v2.0.2, librttopo v1.1.0, minizip v1.1, w/ Python 3.9.6 by akesandgren · Pull Request #16856 · easybuilders/easybuild-easyconfigs

akesandgren · 2022-12-12T14:21:37Z

(created using eb --new-pr)

Depends on: ~~easybuilders/easybuild-easyblocks#2845~~

….eb, Qt5Webkit-5.212.0-alpha4-GCCcore-11.2.0.eb and patches: QGIS-3.28.1_fix-SIP-macro.patch, GRASS-8.2.0_GCC_ldlibs.patch, Qt5Webkit-5.212.0-alpha4_dont_use_multiarch_lib_dir.patch, Qt5Webkit-5.212.0-alpha4_fix_deprecated_encoding_in_json.load.patch, Qt5Webkit-5.212.0-alpha4_fix_python_path.patch, Qt5Webkit-5.212.0-alpha4_use_CXX_true_instead_of_TRUE_define.patch

jfgrimm · 2022-12-12T17:08:55Z

Test report by @jfgrimm
FAILED
Build succeeded for 61 out of 69 (15 easyconfigs in total)
himem03.pri.viking.alces.network - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/bbbf9e7a6a9fcc8192fb82912bfd3722 for a full test report.

… 3.2.0

…0 depending on wxWidgets 3.2.0

… on glew-2.2.0-elg

…ng if running.

jfgrimm · 2022-12-13T12:17:20Z

Test report by @jfgrimm
FAILED
Build succeeded for 1 out of 8 (15 easyconfigs in total)
himem03.pri.viking.alces.network - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/022d87e4f98310a020a81fd14a2fa28a for a full test report.

edit: QScintilla failed with error: configure.py: error: '/users/jfg508/scratch/easybuild-dev/software/PyQt5/5.15.4-GCCcore-11.2.0/share/sip/PyQt5' is not a directory

akesandgren · 2022-12-13T14:00:03Z

I knew I forgot something... qscintilla.py coming up.

akesandgren · 2022-12-13T14:03:59Z

@jfgrimm See easybuilders/easybuild-easyblocks#2845

jfgrimm · 2022-12-14T10:21:28Z

Test report by @jfgrimm
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#2845
FAILED
Build succeeded for 1 out of 7 (15 easyconfigs in total)
himem03.pri.viking.alces.network - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/02989d378d5a341db71809ab62a3a5f4 for a full test report.

jfgrimm · 2022-12-14T10:25:21Z

QScintilla works for me with the easyblock update, but I'm now failing to build libwpe:

228 [ 38%] Building CXX object CMakeFiles/wpe.dir/src/pasteboard-generic.cpp.o                                              
229 /opt/apps/easybuild/software/GCCcore/11.2.0/bin/g++ -DWPE_COMPILATION -DWPE_ENABLE_XKB=1 -Dwpe_EXPORTS -I/dev/shm/jfg508/libwpe/1.13.3/GCCcore-11.2.0/libwpe-1.13.3/include -I/dev/shm/jfg    508/libwpe/1.13.3/GCCcore-11.2.0/libwpe-1.13.3/src -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -fno-exceptions -fno-rtti -Wall -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=gn    u++11 -MD -MT CMakeFiles/wpe.dir/src/pasteboard-generic.cpp.o -MF CMakeFiles/wpe.dir/src/pasteboard-generic.cpp.o.d -o CMakeFiles/wpe.dir/src/pasteboard-generic.cpp.o -c /dev/shm/jfg508/    libwpe/1.13.3/GCCcore-11.2.0/libwpe-1.13.3/src/pasteboard-generic.cpp
230 In file included from /usr/include/string.h:633,                                                                        
231                  from /dev/shm/jfg508/libwpe/1.13.3/GCCcore-11.2.0/libwpe-1.13.3/src/pasteboard.c:32:                   
232 /usr/include/bits/string2.h:1305:33: error: attempt to use poisoned "calloc"                                            
233  1305 |                      ? (char *) calloc ((size_t) 1, (size_t) 1)               \                                 
234       |                                 ^                                                                               
235 /usr/include/bits/string2.h:1307:53: error: attempt to use poisoned "malloc"                                            
236  1307 |                           char *__retval = (char *) malloc (__len);           \                                 
237       |                                                     ^                                                           
238 /usr/include/bits/string2.h:1325:33: error: attempt to use poisoned "calloc"                                            
239  1325 |                      ? (char *) calloc ((size_t) 1, (size_t) 1)               \                                 
240       |                                 ^                                                                               
241 /usr/include/bits/string2.h:1331:47: error: attempt to use poisoned "malloc"                                            
242  1331 |                           __retval = (char *) malloc (__len);                 \                                 
243       |                                               ^                                                                 
244 make[2]: *** [CMakeFiles/wpe.dir/src/pasteboard.c.o] Error 1

akesandgren · 2022-12-14T10:27:50Z

fortunately for me libwpe is not my problem :-)

Compile of pasteboard-generic works ok for me:

/hpc2n/eb/software/GCCcore/11.2.0/bin/g++ -DWPE_COMPILATION -DWPE_ENABLE_XKB=1 -Dwpe_EXPORTS -I/scratch/eb-buildpath/libwpe/1.13.3/GCCcore-11.2.0/libwpe-1.13.3/include -I/scratch/eb-buildpath/libwpe/1.13.3/GCCcore-11.2.0/libwpe-1.13.3/src -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -fno-exceptions -fno-rtti -Wall -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=gnu++11 -MD -MT CMakeFiles/wpe.dir/src/pasteboard-generic.cpp.o -MF CMakeFiles/wpe.dir/src/pasteboard-generic.cpp.o.d -o CMakeFiles/wpe.dir/src/pasteboard-generic.cpp.o -c /scratch/eb-buildpath/libwpe/1.13.3/GCCcore-11.2.0/libwpe-1.13.3/src/pasteboard-generic.cpp

akesandgren · 2022-12-15T06:41:49Z

@boegelbot Please test @ generoso

boegelbot · 2022-12-15T06:45:10Z

@akesandgren: Request for testing this PR well received on login1

PR test command 'EB_PR=16856 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_16856 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 9784

Test results coming soon (I hope)...

Details

- notification for comment with ID 1352624708 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-12-15T10:13:43Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/a501a3b53ddcebc48f01fcea8d7d3fe0 for a full test report.

jfgrimm · 2022-12-22T12:21:14Z

libwpe issue resolved in #17001 :)

jfgrimm · 2022-12-22T14:20:12Z

Test report by @jfgrimm
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#2845
SUCCESS
Build succeeded for 17 out of 17 (15 easyconfigs in total)
node064.pri.viking.alces.network - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6138 CPU @ 2.00GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/afafe472d9c47e758808e332ed0b58e0 for a full test report.

easybuild/easyconfigs/g/GRASS/GRASS-8.2.0-foss-2021b.eb

jfgrimm · 2022-12-22T15:40:09Z

Test report by @jfgrimm
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node064.pri.viking.alces.network - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6138 CPU @ 2.00GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/ac16277a395b12f59e6e993a0e9e438b for a full test report.

jfgrimm

lgtm

jfgrimm · 2022-12-22T15:44:51Z

@boegelbot please test @ generoso
CORE_CNT=16

boegelbot · 2022-12-22T15:45:10Z

@jfgrimm: Request for testing this PR well received on login1

PR test command 'EB_PR=16856 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_16856 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 9885

Test results coming soon (I hope)...

Details

- notification for comment with ID 1362990337 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

akesandgren · 2022-12-22T15:48:48Z

Test report by @akesandgren
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
b-an02.hpc2n.umu.se - Linux Ubuntu 20.04, x86_64, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 3.8.10
See https://gist.github.com/b31b8698366e094b0168909655f0792f for a full test report.

boegelbot · 2022-12-22T17:00:34Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
cnx1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/634a2af24651bb692c008dc8da5d68d7 for a full test report.

boegel · 2023-01-04T00:01:11Z

Test report by @boegel
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
node3130.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/ee29c1616039390a80acc687a52e64d5 for a full test report.

boegel

lgtm

boegel · 2023-01-04T08:02:57Z

Going in, thanks @akesandgren!

akesandgren added the update label Dec 12, 2022

akesandgren added this to the 4.x milestone Dec 12, 2022

akesandgren added 4 commits December 12, 2022 15:48

wxPython: clarify that wxPython 4.2 requires wxWidgets >= 3.2

d42d64a

QGIS: Add missing author info for patch and update checksums.

3162d2e

QtKeychain: Add osdependency on libsecret

5181682

Delete empty last line in librttopo and minizip.

8dacf50

akesandgren added 4 commits December 13, 2022 09:30

add exception to test suite for wxPython 4.2.0 depending on wxWidgets…

94786fc

… 3.2.0

add exception to test suite for packages that depend on wxPython 4.2.…

a06c1e0

…0 depending on wxWidgets 3.2.0

add exception to test suite for packages that have a chain dependency…

4ccb40e

… on glew-2.2.0-elg

QtKeyChain: Turn of use of libsecret. It should still use GNOME Keyri…

2ee0d06

…ng if running.

jfgrimm reviewed Dec 22, 2022

View reviewed changes

easybuild/easyconfigs/g/GRASS/GRASS-8.2.0-foss-2021b.eb Show resolved Hide resolved

GRASS: check for actual files/dirs in sanity_check_paths

c13a8e9

jfgrimm approved these changes Dec 22, 2022

View reviewed changes

easybuilders deleted a comment from boegelbot Jan 3, 2023

boegel changed the title ~~{geo}[foss/2021b] QGIS v3.28.1, GRASS v8.2.0, Qt5Webkit v5.212.0-alpha4 w/ Python 3.9.6~~ {geo}[foss/2021b] QGIS v3.28.1, GRASS v8.2.0, Qt5Webkit v5.212.0-alpha4, wxPython v4.2.0, attrdict3 v2.0.2, librttopo v1.1.0, minizip v1.1, w/ Python 3.9.6 Jan 3, 2023

boegel modified the milestones: 4.x, next release (4.7.0) Jan 4, 2023

boegel approved these changes Jan 4, 2023

View reviewed changes

boegel merged commit 0b11e3d into easybuilders:develop Jan 4, 2023

akesandgren deleted the 20221212152129_new_pr_QGIS3281 branch January 4, 2023 12:38

boegel mentioned this pull request Oct 27, 2023

update sanity check in wxPython easyblock for version 4.2.0 easybuilders/easybuild-easyblocks#3023

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