{lib}[foss/2021b] DeepLabCut v2.2.3 w/ Python 3.9.6 by sassy-crick · Pull Request #16420 · easybuilders/easybuild-easyconfigs

sassy-crick · 2022-10-17T09:28:55Z

(created using eb --new-pr)

Requires:

boegelbot · 2022-10-17T10:01:07Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3263959793
Output from first failing test suite run:

ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 837, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b-CUDA-11.4.1 (no easyconfig file or existing module found)'

======================================================================
FAIL: test__parse_easyconfig_DeepLabCut-2.2.3-foss-2021b-CUDA-11.4.1.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig DeepLabCut-2.2.3-foss-2021b-CUDA-11.4.1.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 1502, in innertest
    template_easyconfig_test(self, spec_path)
  File "test/easyconfigs/easyconfigs.py", line 1477, in template_easyconfig_test
    self.fail(error_msg)
AssertionError: use of `True` to indicate the system toolchain for dependency CUDA is deprecated, use the `SYSTEM` template constant instead

======================================================================
FAIL: test_pr_python_packages (test.easyconfigs.easyconfigs.EasyConfigTest)
Several checks for easyconfigs that install (bundles of) Python packages.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 1061, in test_pr_python_packages
    self.fail('\n'.join(failing_checks))
AssertionError: sanity_pip_check should be enabled in DeepLabCut-2.2.3-foss-2021b-CUDA-11.4.1.eb

----------------------------------------------------------------------
Ran 15503 tests in 551.469s

FAILED (failures=2, errors=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

boegelbot · 2022-10-17T14:01:32Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3264426853
Output from first failing test suite run:

ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 326, in test_conflicts
    self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b-CUDA-11.4.1 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 313, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b-CUDA-11.4.1 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 837, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b-CUDA-11.4.1 (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 15503 tests in 1034.285s

FAILED (errors=3)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

boegelbot · 2022-10-24T18:24:14Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3314898453
Output from first failing test suite run:

ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 326, in test_conflicts
    self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b-CUDA-11.4.1, MoviePy/1.0.3-foss-2021b (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 313, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b-CUDA-11.4.1, MoviePy/1.0.3-foss-2021b (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 839, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b-CUDA-11.4.1, MoviePy/1.0.3-foss-2021b (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 15563 tests in 1141.511s

FAILED (errors=3)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

boegel · 2023-03-08T09:25:13Z

easybuild/easyconfigs/d/DeepLabCut/DeepLabCut-2.2.3-foss-2021b-CUDA-11.4.1.eb

+    ('ruamel.yaml', '0.17.21'),
+    ('PyYAML', '5.4.1'),
+    ('statsmodels', '0.13.1'),
+    ('PyTorch', '1.11.0', versionsuffix),


May make sense to bump this to 1.12.1 if #17154 (CUDA 11.4.1) or #17272 (CUDA 11.5.1) gets merged

sassy-crick · 2024-01-26T20:49:40Z

Closed as PR #16385 was closed and also super-seeded by merged PR #19166

adding easyconfigs: DeepLabCut-2.2.3-foss-2021b-CUDA-11.4.1.eb

906c2b2

sassy added 4 commits October 17, 2022 11:06

True replaced by SYSTEM

c356fd6

pip_sanity_check added

999cd69

Comment added

d1386ba

download_dep removed as PythonBundle being used

675a440

PyTables added as extension as version 3.7.0 is required

0bf54b7

boegel reviewed Mar 8, 2023

View reviewed changes

boegel added this to the 4.x milestone Oct 23, 2023

boegel added the update label Oct 23, 2023

sassy-crick closed this Jan 26, 2024

sassy-crick deleted the 20221017102852_new_pr_DeepLabCut223 branch January 26, 2024 20:49

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

{lib}[foss/2021b] DeepLabCut v2.2.3 w/ Python 3.9.6#16420

{lib}[foss/2021b] DeepLabCut v2.2.3 w/ Python 3.9.6#16420
sassy-crick wants to merge 6 commits intoeasybuilders:developfrom
sassy-crick:20221017102852_new_pr_DeepLabCut223

sassy-crick commented Oct 17, 2022 •

edited

Loading

Uh oh!

boegelbot commented Oct 17, 2022

Uh oh!

boegelbot commented Oct 17, 2022

Uh oh!

boegelbot commented Oct 24, 2022

Uh oh!

boegel Mar 8, 2023 •

edited

Loading

Uh oh!

sassy-crick commented Jan 26, 2024

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

Conversation

sassy-crick commented Oct 17, 2022 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

boegelbot commented Oct 17, 2022

Uh oh!

boegelbot commented Oct 17, 2022

Uh oh!

boegelbot commented Oct 24, 2022

Uh oh!

boegel Mar 8, 2023 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Choose a reason for hiding this comment

Uh oh!

sassy-crick commented Jan 26, 2024

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

sassy-crick commented Oct 17, 2022 •

edited

Loading

boegel Mar 8, 2023 •

edited

Loading