Update docs and Makefile to use jupyter-url and jupyter-token

Makefile

@@ -59,12 +59,9 @@ build-docker: ## build the docker image
 
 start-docker: ## start the jupyter mcp server in docker
 	docker run -i --rm \
-	  -e DOCUMENT_URL=http://localhost:8888 \
-	  -e DOCUMENT_ID=notebook.ipynb \
-	  -e DOCUMENT_TOKEN=MY_TOKEN \
-	  -e RUNTIME_URL=http://localhost:8888 \
+	  -e JUPYTER_URL=http://localhost:8888 \
+	  -e JUPYTER_TOKEN=MY_TOKEN \
 	  -e START_NEW_RUNTIME=true \
-	  -e RUNTIME_TOKEN=MY_TOKEN \
 	  --network=host \
 	  datalayer/jupyter-mcp-server:latest
 
@@ -90,12 +87,9 @@ start: ## start the jupyter mcp server with streamable-http transport
 	@exec echo
 	jupyter-mcp-server start \
 	  --transport streamable-http \
-	  --document-url http://localhost:8888 \
-	  --document-id notebook.ipynb \
-	  --document-token MY_TOKEN \
-	  --runtime-url http://localhost:8888 \
+	  --jupyter-url http://localhost:8888 \
+	  --jupyter-token MY_TOKEN \
 	  --start-new-runtime true \
-	  --runtime-token MY_TOKEN \
 	  --port 4040
 
 start-empty: ## start the jupyter mcp server with streamable-http transport and no document nor runtime
@@ -106,11 +100,9 @@ start-empty: ## start the jupyter mcp server with streamable-http transport and
 	@exec echo
 	jupyter-mcp-server start \
 	  --transport streamable-http \
-	  --document-url http://localhost:8888 \
-	  --document-token MY_TOKEN \
-	  --runtime-url http://localhost:8888 \
+	  --jupyter-url http://localhost:8888 \
+	  --jupyter-token MY_TOKEN \
 	  --start-new-runtime false \
-	  --runtime-token MY_TOKEN \
 	  --port 4040
 
 start-jupyter-server-extension: ## start jupyter server with MCP extension

docs/docs/configure/index.mdx

@@ -134,22 +134,63 @@ Options:
   --transport [stdio|streamable-http]  Transport type (default: stdio)
   --provider [jupyter|datalayer]      Provider type (default: jupyter)  
   --jupyterlab BOOLEAN               Enable JupyterLab mode (default: true)
-  --runtime-url TEXT                  Runtime URL for kernel operations (default: http://localhost:8888)
+  --runtime-url TEXT                  Runtime URL for kernel operations (default: None)
   --runtime-token TEXT                Runtime authentication token (default: None)
   --runtime-id TEXT                   Specific kernel ID to use (default: None)
-  --start-new-runtime BOOLEAN         Create new runtime vs use existing (default: false)
-  --document-url TEXT                 Document URL for notebook operations (default: http://localhost:8888)
+  --start-new-runtime BOOLEAN         Create new runtime vs use existing (default: true)
+  --document-url TEXT                 Document URL for notebook operations (default: None)
   --document-id TEXT                  Notebook path/ID (default: None)
   --document-token TEXT               Document authentication token (default: None)
+  --jupyter-url TEXT                  Jupyter URL as default for both document and runtime URLs (default: None)
+  --jupyter-token TEXT                Jupyter token as default for both document and runtime tokens (default: None)
   --port INTEGER                      Port for streamable-http transport (default: 4040)
 ```
 
-**Example:**
+### Additional Commands
+
+The server also supports additional commands for advanced workflows:
+
+#### Connect Command
+```bash
+jupyter-mcp-server connect --help
+
+Usage: jupyter-mcp-server connect [OPTIONS]
+
+Connect a Jupyter MCP Server to a document and a runtime.
+
+Options:
+  --provider [jupyter|datalayer]      Provider type (default: jupyter)
+  --jupyterlab BOOLEAN               Enable JupyterLab mode (default: true)
+  --runtime-url TEXT                  Runtime URL for kernel operations (default: None)
+  --runtime-token TEXT                Runtime authentication token (default: None)
+  --runtime-id TEXT                   Specific kernel ID to use (default: None)
+  --document-url TEXT                 Document URL for notebook operations (default: None)
+  --document-id TEXT                  Notebook path/ID (default: None)
+  --document-token TEXT               Document authentication token (default: None)
+  --jupyter-url TEXT                  Jupyter URL as default for both document and runtime URLs (default: None)
+  --jupyter-token TEXT                Jupyter token as default for both document and runtime tokens (default: None)
+  --jupyter-mcp-server-url TEXT       URL of the Jupyter MCP Server to connect to (default: http://localhost:4040)
+```
+
+#### Stop Command
+```bash
+jupyter-mcp-server stop --help
+
+Usage: jupyter-mcp-server stop [OPTIONS]
+
+Stop a running Jupyter MCP Server.
+
+Options:
+  --jupyter-mcp-server-url TEXT       URL of the Jupyter MCP Server to stop (default: http://localhost:4040)
+```
+
+### Usage Examples
+
 ```bash
 jupyter-mcp-server start \
   --transport streamable-http \
-  --document-url http://localhost:8888 \
-  --document-token MY_TOKEN \
+  --jupyter-url http://localhost:8888 \
+  --jupyter-token MY_TOKEN \
   --port 4040
 ```
 

docs/docs/deployment/jupyter/streamable-http/standalone/index.mdx

@@ -17,14 +17,14 @@ pip install datalayer_pycrdt==0.12.17
 Then, start JupyterLab with the following command.
 
 ```bash
-jupyter lab --port 8888 --IdentityProvider.token MY_TOKEN --ip 0.0.0.0
+jupyter lab --port 8888 --IdentityProvider.token MY_TOKEN
 ```
 
 You can also run `make jupyterlab` if you cloned the repository.
 
 :::note
 
-The `--ip` is set to `0.0.0.0` to allow the MCP Server running in a Docker container to access your local JupyterLab.
+If you wish to start the Jupyter MCP server using docker, add `--ip 0.0.0.0` to the jupyter lab command to allow the MCP Server running in a Docker container to access your local JupyterLab.
 
 :::
 
@@ -46,8 +46,8 @@ Install and start the server:
 pip install jupyter-mcp-server
 jupyter-mcp-server start \
   --transport streamable-http \
-  --document-url http://localhost:8888 \
-  --document-token MY_TOKEN \
+  --jupyter-url http://localhost:8888 \
+  --jupyter-token MY_TOKEN \
   --port 4040
 ```