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Issues list

Bug if pixel_size = 1.0 um

#162 opened Sep 25, 2024 by ahillsley

Hardcoded focus finding variables in stabilization algorithm

#144 opened Jul 2, 2024 by edyoshikun

Apply_affine should allow custom target channels rather than copying all enhancement

New feature or request

#143 opened Jul 2, 2024 by edyoshikun

Acquisition: add check for sufficient disk space enhancement

New feature or request

#139 opened May 22, 2024 by ieivanov

Registration: existing plugin analysis

Software development needed for data analysis

#136 opened Apr 2, 2024 by ziw-liu

Registration: in estimate_affine check that selected points are not outside of the data volume when in grid mode

#126 opened Jan 17, 2024 by ieivanov

Registration: check how apply_affine handles positions will all nans or zeros

#125 opened Jan 17, 2024 by ieivanov

Registration: find better cropping algorithm

#124 opened Jan 17, 2024 by ieivanov

Refactor and unify reconstruction calls

#123 opened Jan 17, 2024 by ieivanov

Registration: rename target to fixed and source to moving to match convention in other image registration pipelines

#121 opened Jan 17, 2024 by ieivanov

Slurmkit scripts slowing down the I/O

#111 opened Dec 5, 2023 by edyoshikun

Mantis processing pipeline

#110 opened Dec 4, 2023 by edyoshikun

Deskew configuration file's px_to_scan_ratio parameter is redundant with scale metadata

#101 opened Sep 22, 2023 by talonchandler

Plot bleaching estimates with correct time and/or per volume units

#96 opened Aug 16, 2023 by talonchandler

Need a pipeline to easily append new channels to existing stores

#84 opened Aug 10, 2023 by edyoshikun

Cannot open two instances of micromanager wontfix

This will not be worked on

#77 opened Aug 6, 2023 by edyoshikun

Rename settings files to config files and clean up examples folders documentation

Improvements or additions to documentation

enhancement

New feature or request

#68 opened Jul 25, 2023 by ieivanov 0.1.0: 4D phase + fluorescence imaging of 10 wells/positions over 24 hours.

Add tests for mantis acquisition engine enhancement

New feature or request

#66 opened Jul 21, 2023 by ieivanov

Develop image-based autofocus for LF arm enhancement

New feature or request

hardware

Plans for new hardware development and troubleshooting

#63 opened Jul 21, 2023 by ieivanov

Mantis acq fails silently if wrong config group / config name is provided bug

Something isn't working

#60 opened Jul 18, 2023 by ieivanov

Merge slurm deskew with mantis deskew CLI call analysis

Software development needed for data analysis

enhancement

New feature or request

#57 opened Jul 17, 2023 by ieivanov

IPC diagram documentation

Improvements or additions to documentation

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