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Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

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  1. GEDI GEDI Public

    Gene Expression Decomposition and Integration

    HTML 15

  2. REMBRANDTS REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R 13 11

  3. DiffRAC DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    R 8 1

  4. CRIES CRIES Public

    Counting Reads for Intronic and Exonic Segments

    R 7 1

  5. MPAQT MPAQT Public

    Shell 6

  6. RCADE2 RCADE2 Public

    Recognition Code-Assisted Discovery of regulatory Elements v2

    C++ 5 1

Repositories

Showing 10 of 22 repositories
  • lorna-manuscript Public

    LoRNA-SH: A long-context RNA foundation model for predicting transcriptome architecture. Pre-processing and downstream analysis scripts.

    csglab/lorna-manuscript’s past year of commit activity
    R 4 MIT 1 0 0 Updated Oct 21, 2024
  • GEDI Public

    Gene Expression Decomposition and Integration

    csglab/GEDI’s past year of commit activity
    HTML 15 BSD-2-Clause 0 0 0 Updated Aug 21, 2024
  • MPAQT Public
    csglab/MPAQT’s past year of commit activity
    Shell 6 MIT 0 0 0 Updated Aug 18, 2024
  • trex Public

    TRex: a computational method to associate changes in exon-centric splicing events with experimental variables form complex experimental designs

    csglab/trex’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Jul 10, 2024
  • trex_manuscript Public
    csglab/trex_manuscript’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jul 10, 2024
  • GEDI_manuscript Public

    This repository hosts R markdown notebooks reproducing the figures from the GEDI manuscript

    csglab/GEDI_manuscript’s past year of commit activity
    HTML 0 BSD-2-Clause 0 1 0 Updated May 17, 2024
  • DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    csglab/DiffRAC’s past year of commit activity
    R 8 GPL-3.0 1 0 0 Updated May 13, 2024
  • hgthesis_lms Public

    ALTERNATIVE SPLICING PROGRAMS IN TUMOR DEVELOPMENT AND PROGRESSION

    csglab/hgthesis_lms’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Feb 22, 2024
  • REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    csglab/REMBRANDTS’s past year of commit activity
    R 13 GPL-3.0 11 7 1 Updated Dec 16, 2023
  • JAMS Public

    Quantitative modeling of sequence, DNA accessibility, and methylation preferences of transcription factors using ChIP-seq data.

    csglab/JAMS’s past year of commit activity
    R 2 GPL-3.0 1 0 0 Updated Nov 1, 2023
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