Bump GMT from 6.6.0.dev4+373034f to 6.6.0.dev5+b3580a7

[weiji14]

This is an automated pull request!

This PR will update the following package:

• gmt from 6.6.0.dev4+373034f to 6.6.0.dev5+b3580a7
  • Full list of commits made since last release viewable at compare view

Notes for merging this PR:

1. Feel free to push to the bot's branch to update this PR if needed.
2. Checklist before merging this PR:

• Dependencies have been updated if changed
• Tests have passed

Closes #307

[conda-forge-admin]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe/meta.yaml) and found it was in an excellent condition.

[weiji14]

Got this error at https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=1208046&view=logs&j=7b6f2c87-f3a7-5133-8d84-7c03a75d9dfc&t=9eb77fd2-8ddd-5444-8fc0-71cb28dcb736&l=2518:

+ gmt defaults -Vd
gmt: error while loading shared libraries: libmkl_intel_lp64.so.2: cannot open shared object file: No such file or directory

Do we need to explicitly add mkl now? Edit: found this old issue - #2 (comment) with the same error message.

[weiji14]

Also getting these warnings:

WARNING (gmt,lib/libgmt.so.6.6.0): Needed DSO lib/libmkl_intel_lp64.so.2 found in ['conda-forge/linux-64::mkl==2024.2.2=ha957f24_16']
WARNING (gmt,lib/libgmt.so.6.6.0): .. but ['conda-forge/linux-64::mkl==2024.2.2=ha957f24_16'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
WARNING (gmt,lib/libgmt.so.6.6.0): Needed DSO lib/libmkl_intel_thread.so.2 found in ['conda-forge/linux-64::mkl==2024.2.2=ha957f24_16']
WARNING (gmt,lib/libgmt.so.6.6.0): .. but ['conda-forge/linux-64::mkl==2024.2.2=ha957f24_16'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
WARNING (gmt,lib/libgmt.so.6.6.0): Needed DSO lib/libmkl_core.so.2 found in ['conda-forge/linux-64::mkl==2024.2.2=ha957f24_16']
WARNING (gmt,lib/libgmt.so.6.6.0): .. but ['conda-forge/linux-64::mkl==2024.2.2=ha957f24_16'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)

[weiji14]

@seisman, can you check if this change to use -D BLA_VENDOR=Generic makes sense. I'm not familiar with BLAS/LAPACK and all that, but found conda-forge/sundials-feedstock#118 (comment) and this seems to fix the libmkl_intel_lp64.so.2: cannot open shared object file error on linux-64?

For reference, the -D LAPACK_LIBRARIES=$PREFIX/lib/liblapack${SHLIB_EXT} line was added by Leo back in 2017 at #24

[weiji14]

Removing these from runtime, based on https://conda-forge.org/docs/maintainer/knowledge_base/#blas saying that these should only be needed on host?

[weiji14]

Switching from gdal to libgdal-core, because gdal contains Python related dependencies that shouldn't be needed in GMT C.

[weiji14]

I've also cherry-picked the GEOS 3.13.1 migration from #307 into this PR, so can close that one after this is merged.